KEGG   Helicobacter pylori oki828: HPOKI828_03130
Entry
HPOKI828_03130    CDS       T03728                                 
Name
(GenBank) NAD-dependent DNA ligase LigA
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
hpyh  Helicobacter pylori oki828
Pathway
hpyh03030  DNA replication
hpyh03410  Base excision repair
hpyh03420  Nucleotide excision repair
hpyh03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:hpyh00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    HPOKI828_03130
   03410 Base excision repair
    HPOKI828_03130
   03420 Nucleotide excision repair
    HPOKI828_03130
   03430 Mismatch repair
    HPOKI828_03130
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:hpyh03032]
    HPOKI828_03130
   03400 DNA repair and recombination proteins [BR:hpyh03400]
    HPOKI828_03130
Enzymes [BR:hpyh01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     HPOKI828_03130
DNA replication proteins [BR:hpyh03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     HPOKI828_03130
DNA repair and recombination proteins [BR:hpyh03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     HPOKI828_03130
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     HPOKI828_03130
   MMR (mismatch excision repair)
    DNA ligase
     HPOKI828_03130
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      HPOKI828_03130
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB BRCT HHH_2 PTCB-BRCT HHH_5 BRCT_2 RabGAP-TBC DNA_ligase_ZBD
Other DBs
NCBI-ProteinID: AHN43285
Position
complement(618937..620907)
AA seq 656 aa
MIKSQKEYLERIEYLNTLSHHYYNLDDPIVSDAVYDELYQELKAYEEKNPNSIQANSPTQ
KVGAIAPNSFNKNPHLMRMWSLDDVFNQNELQAWLQRILKAYPSASFVCSPKLDGVSLNL
LYQHGKLVKATTRGNGLEGELVSANAKHIANIPHAIAYDGEIEIRGEVIISKKDFDALNK
ERLNANEPLFANPRNAASGSLRQLDSEITKKRKLQFIPWGVGKHSLNFLSFKECLDFIVS
LGFSTIQYLSLNKNHQEIEENYHTLIKEREGFFALLDGMVIVVNELNIQKELGYTQKSPK
FACAYKFPALEKHTKIVGVINQVGRSGAITPVAVLEPVEIAGAIITKATLHNYSEIEKKN
IMLNDRVVVIRSGDVIPKIIKPLESYRDGSQHKIERPKVCPICSHELLCEEIFTYCQNLN
CPARLKESLIHFASKDALNIQGLGDKVIEQLFEEKLIFNALDLYALKLEDLMRLDKFKIK
KAQNLLDAILKSKNPPLWRLINALGIEHIGKGASKTLAKYGLNVLEKSEAEFLEMEGFGV
EMARSLVNFYASNQEFIRSLFDLLNPKNSDMTKEKQKSSSVFNNKTIVLTGTLSKPRQEY
AQMLENLGAKISSSVSAKTDFLIVGENAGSKLALAQKHGVSVLNEEELLKRLKEFD
NT seq 1971 nt   +upstreamnt  +downstreamnt
atgataaaaagccaaaaagaatatttagaaagaattgaatatttaaacaccctatcgcac
cattattacaaccttgatgatcccatcgtaagcgatgcggtctatgatgaactttatcaa
gaattaaaagcttatgaagaaaaaaaccctaatagcattcaagctaattcccctacccaa
aaagtgggggctattgcccccaattcattcaataaaaacccccatttaatgcggatgtgg
agcttagatgatgtgttcaatcaaaatgaattgcaagcgtggttgcaacgcattttaaaa
gcctatcctagcgcttcgttcgtgtgttcgcccaaacttgatggggtttcactcaatctt
ttgtatcaacatggcaagctagtgaaagcgaccactaggggcaacggcttagagggagaa
ttagtgagcgcaaacgctaaacacatcgctaatatcccccatgctatcgcttatgatgga
gaaatagaaatcaggggcgaagtgatcatttctaaaaaggattttgacgctttaaacaaa
gagcgcttaaacgctaatgaacccctattcgccaaccctagaaatgccgcatcagggagt
ttgaggcagcttgatagcgaaatcactaaaaagcgtaaattgcaattcattccttggggc
gtgggcaagcattctttaaatttcctaagctttaaggagtgtttggattttattgtttcg
ctgggttttagcacgattcaatacttaagcctgaacaaaaaccaccaagaaatagaagaa
aattaccacaccctgattaaagaaagggagggcttttttgcccttttagacggcatggtg
atcgttgtgaatgaattgaatattcaaaaggagctaggctacacgcaaaaatcccctaaa
ttcgcttgtgcttataaattcccggctctggaaaaacacacaaaaattgtaggagtcatt
aaccaagtggggcgcagcggcgcgatcacaccggtcgctgttttagagcctgtagaaatt
gctggagctatcattacgaaagccactttacacaattattctgaaattgaaaaaaagaat
atcatgctcaatgatagggttgtcgtcattagaagcggcgatgtgatccctaaaatcatc
aaacctttagaatcttatagggacggctcgcaacataaaattgaacgccccaaagtttgc
cctatatgttcgcatgagcttttatgcgaagagatttttacttattgtcaaaacctcaac
tgcccagcaaggttgaaagaaagcttgattcatttcgcttctaaagacgctttaaacatt
caaggcctaggcgataaagtcatagagcaactttttgaagaaaaactcatttttaacgcc
ctggatttgtatgctttaaaattagaagatttaatgcggctagacaaattcaaaatcaaa
aaagctcaaaatctattggacgctattttaaaaagcaaaaaccctcccttatggcgtttg
attaacgctttagggattgagcatatcggcaagggagcgagtaaaacgctggctaaatac
ggcttaaatgtgttagaaaaaagcgaagccgagtttttagaaatggaaggctttggggtg
gaaatggcgcgctctttagtcaatttttatgcgagcaatcaggaatttatccgatcgtta
tttgatttgttgaaccccaaaaatagcgatatgaccaaagaaaagcaaaaaagctcttct
gttttcaataataaaacgattgttttaaccggcacgctttctaaaccacggcaagaatac
gctcaaatgttagaaaatttgggggcaaaaatttcttcaagcgtgagcgctaaaaccgat
tttttaatcgttggagaaaacgccggctcaaaactcgctctagcacaaaaacatggcgtg
agcgttttgaatgaagaagaattgttaaaacgccttaaagaatttgattaa

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (9)   
   Pfam (9)   
All databases (28)   

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