KEGG   Homo sapiens (human): 219988
Entry
219988            CDS       T01001                                 
Symbol
PATL1, Pat1b, hPat1b
Name
(RefSeq) PAT1 homolog 1, processing body mRNA decay factor
  KO
K12617  DNA topoisomerase 2-associated protein PAT1
Organism
hsa  Homo sapiens (human)
Pathway
hsa03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:hsa00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    219988 (PATL1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:hsa03019]
    219988 (PATL1)
Messenger RNA biogenesis [BR:hsa03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     219988 (PATL1)
  mRNA degradation factors
   5'-3' decay
    Decapping complex
     219988 (PATL1)
SSDB
Motif
Pfam: PAT1
Other DBs
NCBI-GeneID: 219988
NCBI-ProteinID: NP_689929
OMIM: 614660
HGNC: 26721
Ensembl: ENSG00000166889
UniProt: Q86TB9
Structure
Position
11:complement(59636716..59669037)
AA seq 770 aa
MFRYESLEDCPLDEDEDAFQGLGEEDEEIDQFNDDTFGSGAVDDDWQEAHERLAELEEKL
PVAVNEQTGNGERDEMDLLGDHEENLAERLSKMVIENELEDPAIMRAVQTRPVLQPQPGS
LNSSIWDGSEVLRRIRGPLLAQEMPTVSVLEYALPQRPPQGPEDDRDLSERALPRRSTSP
IIGSPPVRAVPIGTPPKQMAVPSFTQQILCPKPVHVRPPMPPRYPAPYGERMSPNQLCSV
PNSSLLGHPFPPSVPPVLSPLQRAQLLGGAQLQPGRMSPSQFARVPGFVGSPLAAMNPKL
LQGRVGQMLPPAPGFRAFFSAPPSATPPPQQHPPGPGPHLQNLRSQAPMFRPDTTHLHPQ
HRRLLHQRQQQNRSQHRNLNGAGDRGSHRSSHQDHLRKDPYANLMLQREKDWVSKIQMMQ
LQSTDPYLDDFYYQNYFEKLEKLSAAEEIQGDGPKKERTKLITPQVAKLEHAYKPVQFEG
SLGKLTVSSVNNPRKMIDAVVTSRSEDDETKEKQVRDKRRKTLVIIEKTYSLLLDVEDYE
RRYLLSLEEERPALMDDRKHKICSMYDNLRGKLPGQERPSDDHFVQIMCIRKGKRMVARI
LPFLSTEQAADILMTTARNLPFLIKKDAQDEVLPCLLSPFSLLLYHLPSVSITSLLRQLM
NLPQSAATPALSNPHLTAVLQNKFGLSLLLILLSRGEDLQSSDPATESTQNNQWTEVMFM
ATRELLRIPQAALAKPISIPTNLVSLFSRYVDRQKLNLLETKLQLVQGIR
NT seq 2313 nt   +upstreamnt  +downstreamnt
atgttccgctacgagtctttggaggattgtcctctggatgaagatgaagatgcatttcag
ggactgggagaagaagatgaagagattgatcaattcaatgatgatacatttgggtcaggt
gcagttgatgatgattggcaggaagcacatgagcgcctggctgaattggaagaaaagcta
ccagtggcagttaatgaacaaacaggcaatggagagagagatgaaatggacttgttgggt
gaccatgaggagaatctggcagaaaggctcagtaagatggtgattgaaaatgaactagaa
gatccagctattatgagggcagtgcagaccaggccagttttacaaccccaaccaggaagt
ctgaattccagtatctgggatggatctgaagttctgaggcgaatccgaggaccactgctt
gctcaggaaatgcctacagtgtctgtattagaatatgctttgcctcagaggcccccccag
ggtccagaagatgatcgggacctttctgaacgagcattaccaaggcggtcaacttcacct
atcattggcagtcctcctgttagagctgtccccataggcaccccacctaaacagatggct
gtacccagcttcacccaacagattctgtgtccgaagcctgtccatgttcggcccccaatg
ccacctcgttatcctgctccctatggtgagaggatgtctccaaaccagctctgcagtgtc
ccgaactcttccctcctgggtcacccttttcctcctagtgttcctcctgttctcagcccc
ctccagagagcacagcttcttggaggagcacagctacagcctggacggatgtctcccagc
cagtttgcacgggtccctggatttgttggtagtccacttgctgccatgaatcccaagttg
ctacaagggcgagttgggcagatgcttcccccagcaccaggcttccgtgccttctttagt
gctccaccctccgctacaccacctccacagcagcaccctcctggcccaggaccccacctg
caaaacctaagatctcaggccccaatgtttagaccggacacaactcacctccatccacag
caccgtcgactcttgcatcagagacagcaacagaatagaagtcagcatcggaatctcaat
ggtgcgggagatagaggaagtcaccggagcagtcatcaagatcatctccgaaaggatcca
tatgccaatctcatgttgcagcgggaaaaggattgggtctctaaaatccagatgatgcaa
ctgcaaagcactgatccctacctggatgatttttattaccagaattactttgaaaaactg
gagaaactgtcagctgctgaagaaatacaaggtgatggccctaagaaggagcgcaccaag
cttatcacccctcaggtggccaaactggagcacgcctataagccagtgcaatttgagggc
tctttgggaaagcttaccgtttctagtgtgaataatccccgaaaaatgattgatgctgtt
gtgacatctcggagtgaggatgatgagacaaaagaaaaacaagttcgagacaagaggaga
aaaacccttgttataattgagaaaacctacagcttactccttgatgtggaggactatgaa
agacgttatctcctaagtctggaagaagagcgacctgccctaatggatgacagaaagcac
aaaatttgtagcatgtatgacaacttaagggggaaattgcctggacaagagaggcctagt
gatgaccactttgtacagatcatgtgtatccgaaaagggaagagaatggttgcccgtatt
cttcctttcctctccacagagcaagcagctgacattctcatgacaacagccaggaacctc
cctttccttatcaagaaggatgcacaagatgaggtgctgccatgcttactgagtcccttc
tctctccttctctatcatcttccatcagtgagtatcaccagccttttgcgacagctaatg
aacctacctcaaagtgcagctacaccagcactctccaatcctcacctcactgctgtgctc
cagaacaagtttggcctgtcactgctcctcatcctcctgagccgtggtgaagacctacag
agttcagaccctgctacagaatcaacacaaaataatcagtggacggaggtgatgttcatg
gcaacacgagaacttctgcggattccccaagcagccctggccaagccaatctctatacct
acaaacctagtgtccctcttttctcgctatgttgaccggcagaaactgaacttgctggag
acaaaactgcagctagttcaggggatacgataa

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Disease (1)   
   OMIM (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (21)   
   KEGG ORTHOLOGY (1)   
   RefGene (12)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   HGNC (1)   
   Ensembl (1)   
   RIKEN BRC-DNA (3)   
   OC (1)   
Protein sequence (3)   
   UniProt (1)   
   SWISS-PROT (1)   
   RefSeq(pep) (1)   
DNA sequence (27)   
   RefSeq(nuc) (1)   
   GenBank (13)   
   EMBL (13)   
3D Structure (3)   
   PDB (3)   
Protein domain (1)   
   Pfam (1)   
All databases (60)   

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