KEGG   Herbinix luporum: SD1D_0345
Entry
SD1D_0345         CDS       T04072                                 
Symbol
rpoA
Name
(GenBank) DNA-directed RNA polymerase subunit alpha
  KO
K03040  DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
Organism
hsd  Herbinix luporum
Pathway
hsd03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:hsd00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    SD1D_0345 (rpoA)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:hsd03021]
    SD1D_0345 (rpoA)
   03400 DNA repair and recombination proteins [BR:hsd03400]
    SD1D_0345 (rpoA)
Enzymes [BR:hsd01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     SD1D_0345 (rpoA)
Transcription machinery [BR:hsd03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     SD1D_0345 (rpoA)
DNA repair and recombination proteins [BR:hsd03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      SD1D_0345 (rpoA)
SSDB
Motif
Pfam: RNA_pol_A_bac RNA_pol_A_CTD RNA_pol_L HHH_5 TfoX_C MukB RAD51D_N
Other DBs
NCBI-ProteinID: CUH91898
UniProt: A0A0K8J3K1
Position
I:346842..347801
AA seq 319 aa
MFDFEKPNIEIAEISEDKKFGRFVVEPLERGYGTTLGNSLRRIMLSSLPGTAVSQIKIDG
VVHEFSVVPGVKEDVTEIIMNIKELAIKNTSDTNEPKVAYIEAEGEVVVTAGDIQADPDI
EILNPDQVIATLCGGPDSRLYMELTITNGRGYVSADKNKKDDLPIGVIPIDSIYTPVERV
NLFVENTRVGQITDYDKLTLDVYTDGTLAPDEALSLAAKVLSVHLDSFIDLSEHAKNAEI
MVEKEDNEKEKVLEMSIDELELSVRSYNCLKRAGINTVEELTNKTAEDMMKVRNLGRKSL
EEVLSKLKELGLSLKQSED
NT seq 960 nt   +upstreamnt  +downstreamnt
gtgtttgattttgaaaaacccaatatagagattgcagaaatttccgaagataagaagttt
ggccgttttgtagtagaaccgttagaaagaggatacggtacaaccctaggtaattctctt
agaagaattatgctatcctcactacccggcactgctgtaagccaaattaagattgacgga
gtagttcatgagttcagtgttgttcctggtgtaaaggaagatgttactgaaatcattatg
aatatcaaagagctggcaatcaaaaacactagtgataccaatgagcccaaagttgcttat
atcgaggctgaaggcgaagttgtagttacagcaggggatatacaggctgacccggatatc
gagatacttaatccagaccaggtgatagctaccttatgtggcggcccggacagtagatta
tatatggagcttacaataacaaacggacgaggttatgtcagcgcggataaaaacaagaaa
gatgacctgccaatcggcgtaatcccgattgattctatatatacaccggtagaacgtgtc
aatctatttgtcgagaatacccgtgtagggcagattactgactatgacaaactaacctta
gatgtatatacagacggtacattggcaccggatgaagcccttagtctggcagcgaaggtg
ttaagcgttcatctggattcctttattgatttatctgagcatgctaagaatgcagaaatc
atggtagaaaaggaagacaatgaaaaagaaaaagtgctcgagatgagtatagacgaattg
gagttatcagttcgctcatataactgcttaaagagggcaggcatcaatactgtcgaagaa
cttacgaataagactgctgaagatatgatgaaggtaagaaatcttggccgtaagtcatta
gaagaagtattgtcaaaactgaaagagctcggtttatccttaaaacagagcgaggactaa

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (16)   
   KEGG ORTHOLOGY (1)   
   RefGene (13)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (7)   
   Pfam (7)   
All databases (31)   

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