KEGG   Histophilus somni 129PT: HS_1564
Entry
HS_1564           CDS       T00386                                 
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
  KO
K03046  DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
Organism
hso  Histophilus somni 129PT
Pathway
hso03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:hso00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    HS_1564 (rpoC)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:hso03021]
    HS_1564 (rpoC)
   03400 DNA repair and recombination proteins [BR:hso03400]
    HS_1564 (rpoC)
Enzymes [BR:hso01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     HS_1564 (rpoC)
Transcription machinery [BR:hso03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     HS_1564 (rpoC)
DNA repair and recombination proteins [BR:hso03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      HS_1564 (rpoC)
SSDB
Motif
Pfam: RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4 Apocytochr_F_C
Other DBs
NCBI-ProteinID: ABI25832
UniProt: Q0I5B8
Position
complement(1762830..1767092)
AA seq 1420 aa
MKDLVKFLKAQSKTSEDFDVIKIGLASPDMIRSWSYGEVKKPETINYRTFKPERDGLFCA
RIFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQAKVRRERMGHIELASPVAHIWFLKS
LPSRIGLLLDMPLRDIERVLYFESYIVIEPGMTDLERGQLLTEEQFLDAEDRWQDEFDAK
MGAEAIQALLRDMDLEVECETLREELQSTNSETKRKKITKRLKLLESFIQSGNKPEWMVM
TVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLIAPDIIVRNEKRML
QESVDALLDNGRRGRAITGSNRRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGP
YLHLHQCGLPKKMALELFRPFIYAKLESRGFATTIKAAKKMVEREDAIVWDILADVIREH
PILLNRAPTLHRLGIQAFEPILIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLTLEAQLE
ARALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDKVNGKGEGMLLQDSREAEKAYRT
GQAELHSRVKVRITEYVKNAIGEFEPQTHLVDTTIGRAILWMIAPKGMPFSLFNQTLGKK
AISKLINESYRRLGLKESVLFADHIMYTGFAYAARSGSSVGIDDMVIPQKKYEIISAAEE
EVAEIQEQFQSGLVTAGERYNKVIDIWAAANERVAKAMMENLSQEEVINREGQPEKQASF
NSIFMMADSGARGSAAQIRQLAGMRGLMARPDGSIIETPITANFREGLNVLQYFISTHGA
RKGLADTALKTANSGYLTRRLVDVAQDLVIIEDDCGTHEGIVMTPLIEGGDVKEALRDRV
LGRVAAEDILKPGTNEVLISRNTLLDEKLCDVIDENSVDSIKVRSVVTCDTDFGVCAKCY
GRDLARGHLINQGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASAAAKESSVQVKNTGTLR
LTNVKFVTNKEGKLVLTSRNTELTIIDTFGRTKEHYKVPYGAVLNHADGEEVTAGETVAN
WDPHTMPVISEVSGFVKFVEIVDGLTVTRQTDELTGLSSIVVQDVGERATAGKDLRPALK
LVDAQGNDIFIPGTDVMAQYFLPGKAIVTLDDGAEVFVGEPLARIPQESVGTKDITGGLP
RVADLFEARKPKEPAILAEISGIVSFGKETKGKRRLLITPMEGETYEEMIPKWRQLNVFE
GELVQRGDLISDGAETPHDILRLRGVHAVTDYIVNEVQEVYRLQGVKINDKHIEVIVRQM
LRKAIITNAYDSEFLEGEQVEVARVKIVNRKRAEEGKPLVEFERELLGITKASLATESFI
SAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGFAYHQNRQKNRLVGGMEN
TTEVKLSAVDEEEIASEFTFSAEDATANLAEMLNMADDAE
NT seq 4263 nt   +upstreamnt  +downstreamnt
gtgaaagacttagttaagtttttaaaagcacaatcaaaaacctctgaagattttgatgtt
attaaaattggtttagcatcaccggatatgatccgttcttggtcatatggtgaggttaag
aagcctgaaacaattaactaccgtacattcaaacctgagcgtgacggtcttttctgtgcc
cgtatttttggaccggtaaaagactatgagtgtctatgcggaaaatacaagcgtttgaaa
caccgtggagtgatttgtgaaaaatgcggtgttgaagtaacacaagccaaagtacgccgt
gaacgcatggggcatattgagcttgcctcacctgttgcacatatttggttcttaaaatca
ttaccgtcccgtattggtttattgttggatatgccactacgtgatattgagcgtgtactt
tattttgaatcttacattgttattgaaccgggaatgactgatcttgagagaggtcaatta
ttaacggaagaacaattcttagacgcagaagatcgttggcaggatgagtttgatgcaaaa
atgggtgcagaagcaattcaagccttgttacgtgatatggatttagaagttgaatgtgaa
acattacgtgaagaattgcaatcaacgaattctgaaactaaacgtaagaaaattacaaaa
cgtttgaaattgttagaatcttttatccagtcaggcaataagccggagtggatggtgatg
acagtattacctgttttaccaccggatctacgcccattagtacctcttgacggagggcgt
tttgcaacatccgatttgaatgatttatatcgtcgtgtaatcaatcgtaacaaccgttta
aaacgcctattagatttaattgcaccggatattatcgttcgtaacgaaaaacgtatgtta
caagagtcagttgatgcgttattagataatggtcgtcgtggtcgtgcaatcaccggttca
aatcgtcgtccgctaaaatctcttgcggatatgattaaaggtaagcaaggtcgtttccgt
cagaatttattagggaaacgtgttgattactcaggtcgttccgtcattacagttggtcca
tacttgcacttacatcaatgcggattgccgaaaaaaatggcattggaattattccgtcca
tttatctacgctaaattagaaagtcgtggctttgcaacgactattaaagctgcgaaaaaa
atggttgagcgtgaagatgcgattgtttgggatattcttgccgatgttattcgtgaacac
ccaattttgctcaaccgtgcaccaacattacaccgtttgggtatccaagcatttgagcca
attcttattgagggaaaagctattcagttgcacccgctggtttgtgcggcatttaatgct
gacttcgatggtgaccaaatggctgtacacgttccattgacattagaagctcaattggaa
gctcgtgcattgatgatgtccacaaacaacattttatctccggcgaatggtgagccgatt
attgttccttcacaagacgttgtattaggtctttactatatgacacgtgataaagtcaac
ggtaaaggcgagggaatgttattacaagattcacgtgaagcagaaaaagcctatcgtaca
ggtcaagctgaattgcattctcgtgtaaaagtgcgtattactgaatatgttaaaaatgca
attggtgaatttgaacctcaaacacatttagtcgatactacaattggtcgtgcaatttta
tggatgattgcaccaaaaggtatgccatttagtttattcaaccaaactttaggtaaaaaa
gcgatttctaaattaatcaacgaaagttatcgtcgtctaggattgaaagagagtgtattg
tttgctgaccatattatgtataccggttttgcttatgctgcacgttccggttcatctgtt
ggtattgatgacatggttattcctcagaaaaaatatgaaattatttctgctgcggaagaa
gaggttgctgaaattcaagaacaattccaatccggtcttgtaacagctggtgaacgctat
aacaaagtaattgatatttgggctgcggcaaacgaacgtgttgctaaagcgatgatggaa
aatctttcgcaagaagaggttatcaatcgtgaagggcagccggaaaaacaagcctcattc
aatagcatctttatgatggcagattctggtgctcgtggttctgcggcacagattcgtcag
ttagcggggatgcgtggtctaatggcacgtccggatggctcaatcattgaaacaccgatt
acagcaaatttccgtgagggtttaaatgtattacagtactttatttcaacccacggggca
cgtaaaggtcttgcggatacagcattaaaaaccgctaactcaggttatctaacccgtcgt
ttagttgatgttgcacaggacttagtgattatcgaagatgactgtggtacacatgaagga
atcgtaatgactccacttatcgagggtggcgatgtaaaagaagcattacgtgatcgtgta
ttaggtcgtgtagcggcagaagatattttaaaaccaggcacaaacgaagtgttaatttct
cgtaataccttattagatgaaaaactttgtgatgtcattgatgaaaattctgttgatagc
atcaaagtgcggtctgttgtaacttgcgatactgattttggtgtgtgtgcaaaatgttac
ggacgtgatttagcacgtggacatttgattaatcaaggtgaagctgtcggtgttattgct
gctcaatcaatcggtgaaccgggtacacagttaaccatgcgtacattccatatcggtggt
gcggcatctgctgcggcaaaagaatctagtgttcaagttaaaaataccggtacattacgt
ttaacaaatgttaaattcgtaacgaataaagaagggaagttagttttaacttcacgtaac
actgagttgacaattattgatacattcggaagaacaaaagagcattataaagtaccttat
ggtgcggtattaaatcatgctgatggtgaagaagttacggcgggtgaaaccgtggctaat
tgggatcctcatacaatgcctgttatttctgaagtcagtggttttgtgaagtttgtggag
attgttgatggactaacggtaactcgccaaaccgatgaattgacagggttatcttcaatc
gtagttcaagatgtaggtgaacgtgcaacagcagggaaagatttacgtccggcattaaaa
ctggttgacgctcaaggtaacgatatttttatcccaggcaccgatgttatggcacaatat
ttcttaccgggtaaagcaattgttaccttagatgatggtgcggaagtctttgttggtgaa
ccattggctcgtattccacaagagtctgtaggaacaaaagatattaccggtggtcttcct
cgtgtagcagatttatttgaagcacgtaaaccaaaagaaccggcaattttagctgaaatt
tctggtatcgtgtctttcggtaaagaaaccaaaggtaaacgtcgtttgttaattacaccg
atggaaggtgaaacatacgaagaaatgattccaaaatggcgtcaattgaacgtatttgaa
ggtgagttggtgcaacgtggtgatttaatttctgatggtgcagaaacaccacatgatatt
ttacgtttacgtggtgtacatgccgtaacagattatatcgttaatgaagttcaagaagtt
taccgcttacaaggggtaaaaattaacgataaacatattgaagttatcgtacgtcaaatg
ttacgcaaagcgattatcactaatgcttatgactctgaattcttagagggagagcaggtc
gaagtcgctagagttaaaattgtcaaccgtaaacgtgccgaggaaggtaagccacttgta
gaattcgaacgtgaattattagggattactaaagcgtcgttggcaacggaatcctttatt
tcagcggcttcgttccaagaaacaactcgtgttctaactgaagcggcagttgcaggtaaa
cgtgatgaattgcgtggcttaaaagaaaacgtgattgtaggtcgcttaattcctgctggt
acaggttttgcatatcaccaaaaccgccaaaaaaatcgattggtaggtggtatggaaaat
acgactgaggttaaattatctgcagttgatgaggaagaaattgcttctgaatttaccttt
tcagcagaagatgcaacagcaaatttggcagagatgctaaatatggcagatgatgcagaa
taa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (20)   
   KEGG ORTHOLOGY (1)   
   RefGene (17)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   SWISS-PROT (1)   
Protein domain (6)   
   Pfam (6)   
All databases (35)   

Download RDF
DBGET integrated database retrieval system