KEGG   Hymenobacter swuensis: Hsw_2454
Entry
Hsw_2454          CDS       T03055                                 
Name
(GenBank) DEAD/DEAH box helicase
  KO
K11927  ATP-dependent RNA helicase RhlE [EC:5.6.2.7]
Organism
hsw  Hymenobacter swuensis
Pathway
hsw03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:hsw00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    Hsw_2454
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:hsw03019]
    Hsw_2454
Enzymes [BR:hsw01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     Hsw_2454
Messenger RNA biogenesis [BR:hsw03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     Hsw_2454
SSDB
Motif
Pfam: DEAD Helicase_C ResIII AAA_19 P-loop_SecA AAA_22 UTP25 Fe-ADH UvrD-helicase ERCC3_RAD25_C HEM4
Other DBs
NCBI-ProteinID: AHJ98049
UniProt: W8EY76
Position
2766506..2767963
AA seq 485 aa
MSFDELNLIEPILSALREEGYVTPTPIQQQAIPQVLEGHDLLGIAQTGTGKTAAFTVPIL
QILHQTAQVERHAPGRIRCLVLTPTRELAIQIGESFQAYGRHLPKLRSTVIFGGVGQHPQ
VQILKRGVEVLIATPGRLLDLMNQGFIDLRNIEVFVLDEADRMLDMGFIHDIKRILPKLP
KQRQTLFFSATMPGQIQDLADTILRPNPVKVAVTPVSSTADTVTQAVYMVEKNDKADLLE
HVLQDKNIRRVLVFTRTKHGADKVVRTLEKAGIEAEAIHGNKSQNHRQRALSNFKAGATR
VLVATDIAARGIDVDELTHVINYEIPNEPESYVHRIGRTGRAGANGTALSFCDDEERAYF
QDIQKLIRRQIPVVQNHPYTSSAVAPVPLSGGPAIKRPKGPAGRPARPGRGQQPAGSGRP
EGQRSQGGQGGSGRSERPSGNSGREGQRGGHAAAGRPAGSSHPEGGSAGGAGRGGQRRFR
GGGNR
NT seq 1458 nt   +upstreamnt  +downstreamnt
atgtcgttcgacgaactcaacctgattgagcctatccttagcgctttgcgcgaggaaggc
tacgttacccccacgcccattcagcagcaggccattccgcaggtgctggaaggccacgac
ctgctgggcattgcccagacgggcaccggcaaaacggccgctttcaccgttcccattctt
cagattctgcaccagacggctcaggtagagcgccacgcacctggccgcatccgctgtctg
gtcctcacgcccacccgtgagctggccattcagatcggggaaagctttcaggcttacggc
cgtcatttgcccaaattgcgctccaccgtcatcttcggcggcgtgggccagcacccacag
gtgcagattctcaagcgcggcgtagaggtgctcattgccacccccggccgcctgctcgac
ctgatgaaccagggcttcatcgacctgcgcaacattgaggtattcgtgctggacgaagcc
gaccggatgctggacatgggcttcatccacgacatcaagcggattctgcccaagctgccc
aagcagcgccagacgctgttcttctccgccactatgcccggtcagattcaggacctggcc
gacaccattctgcggcccaacccggtaaaagtagccgtcacgcccgtgtcgagcacggcc
gataccgtgacccaggcggtgtatatggtggagaaaaacgacaaggccgacctgctggag
catgtgctacaggacaagaacatccgtcgggtgctggttttcacccgtaccaagcacggg
gctgataaggtggtccgcacgctggaaaaggccggtattgaggccgaggccatccacggc
aacaagtcgcaaaaccaccgccagcgcgccctcagcaacttcaaggccggcgcaacccgc
gtactggtagctactgacattgccgcccggggcattgatgtggatgagttgacccacgtc
atcaactacgaaattcccaacgagcccgagtcctacgtgcaccgtatcggccgcacgggc
cgtgccggcgccaacggcaccgccctctccttctgtgatgatgaggagcgcgcctacttc
caggacatccagaagctcatccgccgccagattccagtggtgcagaatcatccgtacacc
tccagcgctgtggccccggtgccgctttcgggcggtccggccatcaagcgtccgaaaggt
ccggccggtcgcccggcgcgtccgggccgcgggcagcaacccgccggctcgggccggccg
gaaggccagcgcagccagggtggtcaaggcggcagtggccgtagtgagcggcctagcggc
aactcggggcgggaaggacagcgcggcggccacgcggcagcgggccggccggcgggttcc
tcacacccggaaggtggcagcgccggtggggctggccggggcggccagcgccgcttccgg
ggcggcggtaaccgctag

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (49)   
   KEGG ORTHOLOGY (1)   
   RefGene (46)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (11)   
   Pfam (11)   
All databases (67)   

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