KEGG   Intrasporangium calvum: Intca_0130
Entry
Intca_0130        CDS       T01385                                 
Name
(GenBank) DNA-(apurinic or apyrimidinic site) lyase; Formamidopyrimidine-DNA glycosylase
  KO
K10563  formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
Organism
ica  Intrasporangium calvum
Pathway
ica03410  Base excision repair
Brite
KEGG Orthology (KO) [BR:ica00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    Intca_0130
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:ica03400]
    Intca_0130
Enzymes [BR:ica01000]
 3. Hydrolases
  3.2  Glycosylases
   3.2.2  Hydrolysing N-glycosyl compounds
    3.2.2.23  DNA-formamidopyrimidine glycosylase
     Intca_0130
 4. Lyases
  4.2  Carbon-oxygen lyases
   4.2.99  Other carbon-oxygen lyases
    4.2.99.18  DNA-(apurinic or apyrimidinic site) lyase
     Intca_0130
DNA repair and recombination proteins [BR:ica03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA glycosylases
     Intca_0130
SSDB
Motif
Pfam: H2TH Fapy_DNA_glyco zf-FPG_IleRS zf-TFIIB OrfB_Zn_ribbon
Other DBs
NCBI-ProteinID: ADU46691
UniProt: E6SFF3
Position
138440..139300
AA seq 286 aa
MPELPEVQALVDFLAERTAGLAVTKVELASISALKTFNPPPQSLEGAPIDGVHRHGKFLD
IDCDGTHLVFHLARAGWLRWSDQLPTTVLRPGKSPIALRVRLSDGSGFDLTEAGTKKSLA
AYIVRDPKEVPGVARLGPDPLADDFTLERFRELLTGRRTQIKGLLRDQEVIAGVGNAYSD
EILHVAKVSPFAIAGSLPPDVVDRLYAALRETLSSAVHAASGKPAKELKDAKRAGMRVHA
RTGQACPECGDVVREVSFADTSLQYCATCQTGGKPLADRRMSRLLK
NT seq 861 nt   +upstreamnt  +downstreamnt
atgcctgagctgcccgaggtgcaggcgctcgtcgacttcctcgccgagcggacggccggc
ctggccgtgacgaaggtcgagctggcctcgatcagcgcgctcaagacgttcaacccgccg
ccccagtcgctcgagggggcacccatcgacggggtgcacaggcacgggaagttcctcgac
atcgactgcgacggcacccatctcgtcttccacctcgcccgggccggctggctgcggtgg
agcgaccagctgccgacgaccgtgctgagacccggcaagtccccgatcgccttgcgcgtc
aggctctccgatggcagcggcttcgacctgaccgaggccggcacgaagaagtcgctcgcc
gcctacatcgtccgcgaccccaaggaggtgcccggtgtcgcccggctcgggccggacccc
ctcgccgacgacttcacgctggagcgcttccgggagctgctcaccggtcggcggacccag
atcaagggcctgctccgcgaccaggaggtcatcgccggggtcgggaacgcctacagcgac
gagatcctccacgtggcgaaggtcagccccttcgccatcgccgggagcctgcccccggac
gtggtggaccgcctctacgcagcgctccgcgagacgctgtcgagcgccgtgcacgctgct
tcgggcaagccggccaaggagctcaaggatgccaagcgggcaggcatgcgcgtccatgcc
cgcacgggccaggcctgccccgagtgtggcgacgtcgtgcgggaggtgagcttcgccgac
acctcgctgcagtactgcgccacctgccagaccggtggcaagccgctcgccgaccggcgg
atgtcccggctgctcaagtag

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (2)   
   KEGG ENZYME (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   RefGene (3)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (5)   
   Pfam (5)   
All databases (19)   

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