KEGG   Ictalurus punctatus (channel catfish): 100304825
Entry
100304825         CDS       T04658                                 
Symbol
vcp
Name
(RefSeq) transitional endoplasmic reticulum ATPase
  KO
K13525  transitional endoplasmic reticulum ATPase
Organism
ipu  Ictalurus punctatus (channel catfish)
Pathway
ipu04137  Mitophagy - animal
ipu04141  Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:ipu00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04141 Protein processing in endoplasmic reticulum
    100304825 (vcp)
 09140 Cellular Processes
  09141 Transport and catabolism
   04137 Mitophagy - animal
    100304825 (vcp)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ipu03019]
    100304825 (vcp)
   03009 Ribosome biogenesis [BR:ipu03009]
    100304825 (vcp)
   04131 Membrane trafficking [BR:ipu04131]
    100304825 (vcp)
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:ipu04147]
    100304825 (vcp)
Messenger RNA biogenesis [BR:ipu03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Ran-mediated transport factors
     100304825 (vcp)
Ribosome biogenesis [BR:ipu03009]
 Eukaryotic type
  Pre-60S particles
   Ribosome quality control proteins
    100304825 (vcp)
Membrane trafficking [BR:ipu04131]
 SNARE
  SNARE associated proteins
   Others
    100304825 (vcp)
 Autophagy
  Aggrephagy
   Other aggrephagy associated proteins
    100304825 (vcp)
Exosome [BR:ipu04147]
 Exosomal proteins
  Exosomal proteins of haemopoietic cells  (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
   100304825 (vcp)
SSDB
Motif
Pfam: AAA AAA_lid_3 CDC48_N RuvB_N AAA_16 CDC48_2 AAA_5 AAA_33 AAA_2 AAA_22 TIP49 AAA_14 RNA_helicase AAA_28 Vps4_C nSTAND3 AAA_18 Parvo_NS1 Mg_chelatase AAA_17 ATPase_2 IstB_IS21 AAA_7 ATPase DUF815 Bac_DnaA ABC_tran AAA_24 NB-ARC ResIII TsaE Zeta_toxin NACHT Sigma54_activat Viral_helicase1 SLFN-g3_helicase bpMoxR KAP_NTPase UFD1 Zot
Other DBs
NCBI-GeneID: 100304825
NCBI-ProteinID: XP_017307754
Ensembl: ENSIPUG00000007814
UniProt: W5UCE9
Position
22:14527352..14537800
AA seq 806 aa
MASGGESKNDDLSTAILKQKNRPNRLIVDESINEDNSVVSLSQAKMDELQLFRGDTVLLK
GKKRRETVCIVLSDDSCSDEKVRMNRVVRNNLRVRLGDVISIQPCPDVKYGKRIHVLPID
DTVEGITGNLFEVYLKPYFLEAYRPIRKGDIFLVRGGMRAVEFKVVETDPSPYCIVAPDT
VIHCEGEPIKREDEEESLNEVGYDDIGGVRKQLAQIKEMVELPLRHPALFKAIGVKPPRG
ILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAI
IFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRF
GRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAAL
QAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPNISWEDIG
GLDDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFI
SIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGSAGDGGGAADRV
INQILTEMDGMSSKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRMAILKAN
LRKSPIAKDVDLDFLAKMTNGFSGADLTEVCQRACKLAIRESIENEIRRERERQTNPSAM
EVEEDDPVPEIRKDHFEEAMRFARRSVSDNDIRKYEMFAQTLQQSRGFGSFRFPSSNQGG
GGPSQGSAGGTGGNVFNEDNDDDLYG
NT seq 2421 nt   +upstreamnt  +downstreamnt
atggcttcgggtggagaatctaaaaatgatgatctttctactgccattttaaaacaaaag
aacagacccaacaggttgatcgttgatgaatccatcaatgaagataacagtgtggtctcg
ctctctcaggccaagatggatgagcttcagcttttcaggggggacactgtgctgctgaag
ggcaagaaaaggagggagacggtttgcatcgtactgtctgacgatagctgctctgatgag
aaagtgcgcatgaacagggtggtgcgcaataacctcagggttcgtctcggagatgtcatc
agcattcagccatgcccagatgtgaagtatgggaaacgcatccatgttctgcccattgat
gacacagtggagggaatcactggcaacttatttgaggtgtacctgaagccttacttccta
gaggcttaccggccaatccgtaaaggtgatatcttccttgtaagaggaggcatgcgtgct
gttgagttcaaagtggtggagactgatcctagcccttactgtatagtggctccagacact
gtcattcactgtgaaggagaacctattaagcgtgaggacgaagaagaatctctgaatgaa
gtcggctacgatgacattggaggtgtgaggaagcagctggctcagatcaaagaaatggtg
gagctgccgctcaggcacccagcactcttcaaggccattggcgtgaaacctccccgtggt
attcttctgtacggaccccccggaactggaaaaactctgattgctcgcgctgtcgcaaat
gaaactggagcattcttcttcctgatcaacggccctgaaattatgagtaaactggctggt
gagtctgagagcaacctgcgtaaagcttttgaagaagccgagaaaaacgctcctgccatc
atcttcattgatgaactggatgctattgcacctaagagagagaagactcacggtgaggta
gagaggcgcattgtgtctcagctgctcaccctgatggacggactgaagcagcgggctcac
gtgatcgtcatggctgccaccaacagacccaacagcattgacccagctctcaggcgattc
ggccgctttgacagagaggtggacattggtattcctgatgccacaggaagactggaaatc
ctgcagatccacactaagaacatgaagctggctgatgatgttgatctggaacaggttgcc
aacgagacccatggtcatgtgggtgctgatttggctgccctgtgctcagaggctgctctg
caggccatccgcaagaagatggacctcattgacctggaggatgagacgattgacgcagag
gtcatgaactccctggctgtcactatggatgacttcaggtgggccctgagccagagcaac
ccatcggctctgcgcgagactgttgtggaagtgcccaacatcagctgggaggacattggt
ggactggatgatgtcaagagagaactgcaggaactggtgcagtacccagtggagcatcca
gacaaattcctgaagtttggtatgactccatccaagggtgtgttgttctatggtccgcca
ggttgtggtaaaaccctcttggccaaggccattgccaatgagtgccaggccaacttcatt
tccatcaaaggccctgaactgctaaccatgtggtttggagagtctgaggctaatgttcgt
gagatctttgataaggctcgtcaagctgccccatgcgtgctcttctttgatgagctggac
tccattgctaaagcccgtggtggaagcgcaggtgacggcggtggagcagccgaccgcgtc
ataaaccagatcctgactgagatggacggcatgtccagcaagaagaacgtcttcatcatt
ggcgccaccaacagaccggatataattgaccctgccatcctcaggcctggccgtctggac
cagcttatctacatccctctgcccgatgagaaatctcgcatggccattcttaaagctaac
ctcaggaagtctccaatcgccaaggatgtagacctggacttcctggccaagatgaccaat
ggcttctctggtgctgacttgacagaggtttgccagcgagcctgcaaactggctattcgt
gagtccatcgagaacgagatcaggagggaacgtgagaggcagacgaacccatcagccatg
gaagtggaggaggatgacccagtgcccgagatcaggaaggaccacttcgaggaggccatg
cgtttcgcccgtcgctctgtcagtgacaacgacatccgcaaatacgagatgtttgcacag
accctgcagcaaagcagaggctttggcagtttcagattcccttccagtaatcagggagga
ggtggaccaagccaaggttccgcaggtggcactggagggaatgtcttcaatgaggacaac
gacgatgacctttacggataa

  All links  
Ontology (5)   
   KEGG BRITE (5)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (140)   
   KEGG ORTHOLOGY (1)   
   RefGene (135)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (7)   
   RefSeq(nuc) (1)   
   GenBank (3)   
   EMBL (3)   
Protein domain (40)   
   Pfam (40)   
All databases (197)   

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