KEGG   Ictalurus punctatus (channel catfish): 100528612
Entry
100528612         CDS       T04658                                 
Symbol
fen1
Name
(RefSeq) flap endonuclease 1
  KO
K04799  flap endonuclease-1 [EC:3.1.-.-]
Organism
ipu  Ictalurus punctatus (channel catfish)
Pathway
ipu03030  DNA replication
ipu03410  Base excision repair
ipu03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:ipu00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    100528612 (fen1)
   03410 Base excision repair
    100528612 (fen1)
   03450 Non-homologous end-joining
    100528612 (fen1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:ipu03032]
    100528612 (fen1)
   03400 DNA repair and recombination proteins [BR:ipu03400]
    100528612 (fen1)
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:ipu04147]
    100528612 (fen1)
DNA replication proteins [BR:ipu03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   Other elongation factors
    100528612 (fen1)
 Prokaryotic type
   Elongation factors (archaeal)
    Other elongation factors
     100528612 (fen1)
DNA repair and recombination proteins [BR:ipu03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     100528612 (fen1)
Exosome [BR:ipu04147]
 Exosomal proteins
  Exosomal proteins of haemopoietic cells  (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
   100528612 (fen1)
SSDB
Motif
Pfam: XPG_N XPG_I 5_3_exonuc HHH_5
Other DBs
NCBI-GeneID: 100528612
NCBI-ProteinID: NP_001187811
Ensembl: ENSIPUG00000001277
UniProt: E3TFR6
Position
1:5015832..5026255
AA seq 380 aa
MGIHGLAKLIADQAPTAIREQDIKNYFGRKIAIDASMCIYQFLIAVRRDGNVLQNDDGET
TSHLMGMFYRTIRMLDSGIKPVYVFDGKPPQLKSGELEKRGERRAEAEKLLAQAQEMGEQ
ENIDKFSKRLVKVTKQHNDECKKLLTLMGVPYIEAPCEAEASCAALVKAGKAYATATEDM
DGLTFGTSVLLRHLTASEAKKLSIQEFHFSRVLQEMSLSHQQFIDLCILLGCDYCGTIKG
IGPKRAIDLIKQYGSIEEILDNIDQSKHPAPEDWLYKEARALFLEPEVVDCTAMELKWNE
PDEDGLVQFMCSEKQFSEDRIRNGCKKIMKSRRGSTQGRLDTFFTVTGSISSKRKEPEVK
GSAKKKQKTSATPGKFKKGK
NT seq 1143 nt   +upstreamnt  +downstreamnt
atgggaattcacggcctcgccaagttaatagctgatcaggcgccgacagccatcagggag
caggatattaaaaattacttcgggcgcaagatcgccatagatgcctccatgtgcatttac
cagttcctgatcgccgtcaggcgggacggcaacgtcttacagaacgacgatggcgagacg
acgagccacctgatgggcatgttctacaggaccatacgcatgctggacagtggcatcaag
cccgtgtacgtgtttgacgggaagccccctcagctcaagtccggagagttggagaagaga
ggggagcggagagcagaagccgaaaagctgctagcacaagcacaggaaatgggtgaacag
gagaacatcgacaagttcagcaaacgtctcgtaaaagtcaccaagcagcataacgacgag
tgtaaaaaactcctcacgttaatgggagtgccctatatagaggctccgtgtgaggccgag
gccagctgtgcggctctggtgaaggcaggaaaggcgtacgccacggcgaccgaagatatg
gacggattaacttttggaacaagcgtcctgctgagacacctaaccgccagtgaagccaag
aaactctccatccaggagtttcacttcagccgcgttctgcaggagatgagcttgtcacat
caacagttcatcgatttatgcatcctactgggctgcgactactgcggcacaatcaaaggg
atcggccccaagagagcaatcgacctcatcaaacaatacggttcgatcgaagaaatcctc
gacaacatcgaccaatcgaaacaccctgccccagaagactggctttacaaggaggctcga
gccctgtttctggagcccgaggtggtggactgtaccgccatggagctcaagtggaacgag
cccgacgaggacggactggtccagtttatgtgcagcgagaagcagttcagtgaggatcgt
atccgtaacggctgcaagaaaatcatgaaaagcagacgggggagcactcaagggagactg
gacacgttctttaccgtcacaggatccatctcttctaaacgcaaggagcctgaagtaaaa
ggctcagccaagaagaaacagaagacaagtgcaacaccaggcaagttcaagaagggaaaa
tga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (3)   
   KEGG PATHWAY (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (7)   
   KEGG ORTHOLOGY (1)   
   RefGene (2)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
Protein sequence (3)   
   UniProt (1)   
   RefSeq(pep) (2)   
DNA sequence (4)   
   RefSeq(nuc) (2)   
   GenBank (1)   
   EMBL (1)   
Protein domain (4)   
   Pfam (4)   
All databases (26)   

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