KEGG   Ictalurus punctatus (channel catfish): 108255904
Entry
108255904         CDS       T04658                                 
Name
(RefSeq) CCR4-NOT transcription complex subunit 6-like
  KO
K12603  CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4]
Organism
ipu  Ictalurus punctatus (channel catfish)
Pathway
ipu03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:ipu00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    108255904
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ipu03019]
    108255904
Enzymes [BR:ipu01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.4  poly(A)-specific ribonuclease
     108255904
Messenger RNA biogenesis [BR:ipu03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     108255904
  mRNA degradation factors
   3'-5' decay
    Ccr4-NOT complex
     108255904
SSDB
Motif
Pfam: Exo_endo_phos LRR_8 LRR_4 LRR_1 type_II_gspD_N0
Other DBs
NCBI-GeneID: 108255904
NCBI-ProteinID: XP_017307752
Ensembl: ENSIPUG00000009879
UniProt: A0A2D0PP25
Position
22:complement(12912789..12930273)
AA seq 549 aa
MPKEKYEPPDPRRLYTIMSAEEAASGKKSHWAELEITGRVRNLSSSLWTLTHLTALHINN
NNLSRLPPEIAKLPHLVYLNLSSNKLRSLPAELGNMVSLRELLLNNNCLRVLPYELGRLF
RLQTLGLKGNPLSQDILNLYQEPDGTRKLLNYMLDNLAVHPEQLPQRPWITLRERDQMMP
SAVFTVMCYNVLCDKYATRQLYGYCPSWALNWEYRKKGIMEEITSCDADIISLQEVETEQ
YYTFFLETLKERGYDGYFCPKSRAKLMSEQERKHVDGCAVFFKTEKFALVQKHTVEFNQV
AMANSEGSEVMLNRVMTKDNIGVAVLLELKKELFAGGLKPPSEKQLLLVANAHMHWDPEY
SDVKLIQTVMFLSELKSIAERALSSTGSTSSSSDSSSFPIVLCADLNSLPDSGVVEYLSN
GGVAENHKDFKELRYSECLTNFSCNGKNSKPDGSITHSFQLKSAYESNLMPYTNYTYDFK
GVIDYIFFSKTHMNVLGLLGPLETQWLADNCITGCPHPHIPSDHFSLLAQLEYHPLLSSL
NGLHLPIHR
NT seq 1650 nt   +upstreamnt  +downstreamnt
atgccaaaggagaaatatgagcctccagacccgcgcaggctgtacactatcatgtcggca
gaggaggcagccagtgggaagaagtcgcactgggctgagttagagattaccgggcgggtg
agaaacctgagcagttcgctatggacactcacccatctgaccgctctgcacatcaacaac
aacaacctcagccgactccctcctgaaatcgccaagctccctcacctggtctacctgaat
ctgtcctccaacaaactacgcagcctgccagcagaactcggcaacatggtgtctctcagg
gaattgcttttgaacaacaactgtttacgggttttgccttacgaacttggacggctgttt
cgcttacaaactctcggtctcaaaggtaacccgctgtcccaggatatactcaacctctac
caggagcctgatggcacaagaaaactattgaattacatgctagacaatcttgcagtccac
ccagaacaactccctcaaagaccttggatcacactgagggagcgagaccaaatgatgccc
tcagctgttttcacagtaatgtgctacaacgtgctttgtgataaatatgcaacaaggcag
ctgtatggctactgtccttcctgggctctcaactgggagtataggaagaaaggcatcatg
gaggagatcaccagctgtgatgctgacattatcagtttgcaggaggtggaaacagaacag
tactacacattttttctggaaactctaaaggagcgtggatacgacgggtatttttgtcca
aagtctcgtgccaaactcatgtctgagcaggaaaggaagcacgtggatggctgcgccgtg
ttcttcaaaacagaaaaatttgcactggttcagaaacacacagtggagtttaatcaagta
gccatggccaactctgaaggctcagaggtcatgctgaatcgggtgatgaccaaagacaac
atcggagtagccgtgctgctagagctgaagaaagagctgtttgctggaggcttgaaacca
ccgtcagaaaagcagcttctgttggtggctaacgctcacatgcactgggaccccgaatac
tcagacgtcaaactcatccagaccgtcatgttcctgtccgagctgaaaagcatcgctgag
agggcgttaagctccactgggtccacctcatccagctcagactccagctccttccctatt
gtcctatgtgctgacctcaactcgcttccagactctggtgttgtggaatacctgagcaat
ggcggggttgctgagaatcacaaagacttcaaagagctacgctacagtgagtgtctgacc
aacttcagctgcaacggcaagaacagcaaaccagacggcagcatcacccacagtttccag
ctgaagagcgcctatgagagcaatctgatgccttacactaattacacctatgactttaag
ggtgtgatcgattacattttcttctcaaagacccacatgaatgtgctgggcctgctgggt
cctcttgagacccagtggttggcggataattgcatcaccggatgcccccacccacacatc
ccctctgatcacttttccctcttggctcagttggagtaccaccctctcctgtcgtccctc
aacggcctgcaccttcccatccacaggtag

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (9)   
   KEGG ORTHOLOGY (1)   
   RefGene (4)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (3)   
   RefSeq(nuc) (1)   
   GenBank (1)   
   EMBL (1)   
Protein domain (5)   
   Pfam (5)   
All databases (25)   

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