KEGG   Ictalurus punctatus (channel catfish): 108259238
Entry
108259238         CDS       T04658                                 
Symbol
ccnt2b
Name
(RefSeq) cyclin-T2b
  KO
K15188  cyclin T
Organism
ipu  Ictalurus punctatus (channel catfish)
Pathway
ipu03250  Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:ipu00001]
 09120 Genetic Information Processing
  09125 Information processing in viruses
   03250 Viral life cycle - HIV-1
    108259238 (ccnt2b)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:ipu03021]
    108259238 (ccnt2b)
Transcription machinery [BR:ipu03021]
 Eukaryotic type
  RNA polymerase II system
   Other transcription-related factors
    Super elongation complex (SEC)
     108259238 (ccnt2b)
    Brd4/P-TEFb complex
     108259238 (ccnt2b)
    7SK RNP complex
     108259238 (ccnt2b)
SSDB
Motif
Pfam: CycT2-like_C Cyclin_N TFIIB
Other DBs
NCBI-GeneID: 108259238
NCBI-ProteinID: XP_017314007
Ensembl: ENSIPUG00000013854
UniProt: A0A2D0Q6S7
Position
27:1484129..1494942
AA seq 558 aa
MATVLRGSTKWLFTREQIENTPSRRCGIEPDRELSYRQQAANLIQDMGQRLNVSQLTINT
AIVYMHRFYMLNSFTKFHRNSIFPTTLFLAAKVEEQPRKLEHVIKVAHACLNPQEPPLDT
NSNTYLQQAQELVLLETIVLQTLGFEITVDHPHTDVVRCSQLVRASKDLAQTSYFMATNS
LHLTTFCLQYRPTVVACVCIHLACKWSNWEIPISSDGKHWWEYLDPTVTLQLLDQLTHEF
LQILEKTPSRLKRIRNWRATQAAKRSKTESQSVGGSFQVPGHENLLVDSKADLMESMYPD
VSSALFPLDTLNGLANPSSSYVQADAHSSLQGVPIGSKPQQTATNKLSLEKYREKQAAEL
LQRRKHGHLLPETAALASSSSSSLSAVLMSSASSSSSLARVKYGQSGQEREMKSGSLKRR
HPSSSSSSTENGAASQEELKMKIKMSESGGKSRHSPRSGREKHRASKHDAAHSHAHSHTT
AHAHGSHHKAHRSSKSHAGSAPLPPAPGHTQLGKMDRRPGEGPSAESTAPLLLNGQHMDY
ADTFNMLDSLLNAHNMNY
NT seq 1677 nt   +upstreamnt  +downstreamnt
atggcgacggtgctgcgaggctccacgaaatggctcttcacccgggaacaaatcgaaaat
acgccgtctcgccgctgcggaatcgagccagaccgggaattatcttaccgacaacaagct
gccaacctgatccaggacatgggccagcggcttaacgtctcccagctcacaatcaacact
gccatcgtctatatgcaccgattttatatgctaaactccttcacaaagttccaccgaaat
agcatctttcccaccactctatttttagctgctaaagtggaagagcaaccccggaaactt
gaacacgtcattaaagtggcacacgcctgtcttaatccgcaagaacctccactggacacc
aatagcaatacgtacctccaacaagcacaagagctggtgcttctagaaaccatagtgctg
caaacactgggctttgagattactgtagatcatccacacacagatgtggtgagatgttcc
cagctagtgcgagcgagcaaggacttggcccagacctcctatttcatggctaccaacagt
ctgcacctgaccacgttctgcctgcagtacagacccacggtggtggcgtgcgtgtgcatc
cacctggcctgcaaatggtctaactgggagattcccatctcgtcggacggtaaacactgg
tgggagtatttggaccccacagtcaccctgcagcttctagaccagttaacgcacgagttt
ctacagattttggagaagacacccagcaggttgaaaaggatcagaaactggcgggccact
caagctgctaaaaggtccaaaacagagagccagtcggtggggggctcctttcaggttcct
ggccacgagaacctgctggttgacagtaaggctgatttgatggagagcatgtacccggat
gtgtcctccgctttgttcccgttagacaccctcaacggcctcgccaacccgagctcctcg
tacgtccaggccgacgcccactcgagcttacagggagtaccgatcggcagcaagccgcaa
caaacagccaccaataaactgagtctggagaagtacagggagaaacaagcggccgagctg
ctgcagcgccgcaaacacggccacctgctgcccgaaaccgcggctctggcgtcgtcgtcc
tcgtcgtctttatcggcggtgctgatgtcctcagcgtcatcatcttcctcgttggcacgg
gttaaatatggtcagtccggacaggaacgggagatgaagagtggctcactgaaacggcgt
cacccttcatcctcctcttcctccacggaaaacggcgcagcgagtcaggaggagctaaag
atgaagatcaaaatgtccgagagcggcggtaagagcagacacagccctcgctcgggtcgg
gagaaacaccgagcttcgaaacacgacgccgcgcactcgcacgcacactctcacacaact
gctcacgcgcacggcagccaccacaaagctcaccgctcctctaagagccatgccggctct
gcccccctgcccccagcgcccggccacacccagctggggaagatggacaggaggccgggg
gaggggccgagtgccgagagtacagctcctctgttactcaacggccagcacatggactac
gcagacacgttcaacatgctcgactcgctgctcaacgcacacaacatgaactactaa

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (28)   
   KEGG ORTHOLOGY (1)   
   RefGene (23)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (4)   
   RefSeq(nuc) (2)   
   GenBank (1)   
   EMBL (1)   
Protein domain (3)   
   Pfam (3)   
All databases (41)   

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