KEGG   Ictalurus punctatus (channel catfish): 108270181
Entry
108270181         CDS       T04658                                 
Name
(RefSeq) nuclear exosome regulator NRDE2
  KO
K26109  nuclear exosome regulator NRDE2
Organism
ipu  Ictalurus punctatus (channel catfish)
Brite
KEGG Orthology (KO) [BR:ipu00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ipu03019]
    108270181
Messenger RNA biogenesis [BR:ipu03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Other 3'-5' decay factors
     108270181
SSDB
Motif
Pfam: NRDE-2 TPR_14 TPR_2 TPR_12
Other DBs
NCBI-GeneID: 108270181
NCBI-ProteinID: XP_017332084
Ensembl: ENSIPUG00000016129
UniProt: A0A2D0RNJ8
Position
9:4465368..4474395
AA seq 1122 aa
MALFPAFGGVSDADNSEKTDLEWLRNCSFISGGALSLHQHTTDRHTEESPTPRHTHTSEQ
KSDEDDTRLKKRRKKEKKKRKKQKKCSRDDSEKSDSDTVYPSDLLNRELEPSQRQEDLAN
VAGVLWLDDLQCPSEKLFYLDRKSDPANWEYRSLYRAHITRYKRKGRSALGLDSRTQGVC
WEDSAPDRKRKEKRDERYFSPSSRRLLNSEAPPTLSNPPTDSTISSDAASFIPLPPCKEE
SDSAPQIGTSADPLQVYDLATSLWLEGKGQPEVKGQPEVKGQVQPPSSNMLMARVEEFNR
KLRENPTDVNMWLEFIQFQDEVGASLSGQGVESERALWDRKLSVVERALQLNPGSVELKL
HRLRLGRGLWDSTTQLKEWKKVVFIHPNSAPLWRSYILFTQSQFSSFSVPMVTSVYRKCL
STLSAVQDGQLTSHPALPGTEYHLLDLFVRQCHFLRQAGHSEKAVCLFQALIEFTFFKPD
NVRDLTTKQQVEFFETFWDSGEPRVGEGGARGWKAWMKQQERGGWIQTPDTEEEDEGDDE
DEIKDKTQPRWRIWLNVESWREANHWLPWRPDKAKGQSEEECEDPDRQVLFDDIGLSLIR
VELPELRLRLLLSFLHILGVPIGSASSSSLIWDDSTLLDDSALLDETLDNERPLTSHDIP
LTGVSAVGHMTSQCDSRKKRAGLCKQGEEFVRNVLEQTLPLFPPQDRTEVTLCWMQYEKL
KVLQCVRSGSKKCIRVQGKRSKRLLKRLLKQQENRSSLSLWREYGHVEWLLGNIEEARRV
FDSALMLGRASGLHDSALCNLCLLYAQLEMELLCPGGAESEKATPTSATSSRAVYILTKL
AEGATYRPFTGEISAVTILKARKAYEHAVSEGVACEKACALIGCFGLFQYLTLGVDAADA
VFTQARENLTCTQQREAVCVLHVALLHHHSSVRVFPLRRLRSALRDALTLLPHSAPLWRL
HLQADIRHYNAANTRRFLHAITKGNHSILPRLFTLTTEQQRKKRIDAVLRSGLPAESLPV
FPETGLYNRIRALFEVAVATECGAHCPLLWRRYINFMVCNGDVERGRGIFYRALQHVPWV
KVLYTDAVSLFPDRVQEVLDLLMEKELRLRTPMEELDILLED
NT seq 3369 nt   +upstreamnt  +downstreamnt
atggcgctatttcctgcatttggcggagtgtcagatgctgataactctgaaaaaacagat
ctagaatggctccgtaattgcagtttcattagtgggggtgctttgtctctacaccaacac
accaccgacagacacacggaggagtcacccactccacgccacacacacaccagtgagcag
aaatctgatgaagatgacaccagattaaagaagaggagaaaaaaagagaagaagaagagg
aagaagcagaagaagtgcagcagagatgattcagagaaaagcgactcggacactgtttac
cccagtgaccttctgaaccgagaactggaaccatcacagagacaggaggacttggctaat
gtggctggggttttgtggcttgatgatcttcagtgtcccagtgagaagctgttctacctg
gacagaaagtccgaccctgcgaactgggagtacagatctctgtacagagctcacatcacc
aggtataagaggaagggcaggtctgctctcggattggacagcaggactcagggcgtatgt
tgggaagactctgccccagacaggaagcgtaaagaaaagagagacgagcgttatttctct
ccctccagccgccgccttctcaactctgaagctccacccactctttcaaaccctcccact
gattccaccatatcctctgatgctgcttcatttatccccctccccccctgtaaggaggag
tctgactccgccccccaaatcggcaccagtgctgatccgctccaagtgtatgaccttgca
acctcactgtggctggagggcaaaggtcagcctgaggtcaaaggtcagcctgaggtcaaa
ggtcaggtgcagccgccttcatcaaacatgttaatggcacgagtggaggagtttaacagg
aaactgagggaaaaccccactgatgtaaacatgtggctggagttcatacagtttcaggac
gaggtgggcgcctccctctcagggcagggggtggagtctgagcgtgctctctgggacagg
aagttgagtgtggtggagcgggcgctgcagttgaaccctggcagtgtggagctgaagctg
cacagactcaggctgggcaggggattgtgggatagcacaacacagctgaaggagtggaag
aaggtggtgttcatccacccaaacagtgcccccctgtggaggagctacatcctgttcaca
cagagccagttcagctccttctctgttcccatggtgaccagcgtatacagaaagtgtctg
agcacgctcagtgcggtgcaggacggacagctgacgtctcacccagcgctgccggggaca
gaataccacctgctcgacctatttgtgcgtcagtgccacttcctgcgtcaggcaggtcac
tcagagaaagctgtgtgtcttttccaggctctgattgagtttaccttcttcaaacccgac
aacgtcagagacctaaccactaaacagcaggtggagttctttgagacattctgggacagt
ggagagccgagggtgggggagggtggggctagagggtggaaagcctggatgaagcagcag
gagagaggaggatggatacaaacacctgatacagaggaggaggatgaaggtgatgatgaa
gatgagattaaagataaaacccagccgaggtggagaatctggctcaacgtggagtcttgg
cgggaagccaaccactggttaccatggagaccggacaaagctaagggccaatcagaggag
gagtgtgaggatccagacagacaggtgttgtttgatgatatcggactgtctttgatccga
gtcgagttgccggaactgcgtctgcgtctcttgctctctttccttcatatactgggcgtg
cccattggctccgcctcttcatcaagccttatttgggatgactccaccctattggatgac
tctgcgctgttggacgagactcttgacaacgaaagacctttgacctcccatgacatccca
ctgactggagttagtgctgtgggtcacatgacctctcagtgtgactctaggaagaagagg
gcagggctttgtaaacagggggaggagtttgttaggaatgttctggaacagaccctccca
ctgtttccacctcaggacagaacagaagtcaccctctgctggatgcaatatgaaaaactc
aaggtgctgcagtgtgtgcgtagtggcagtaagaagtgtattagggtgcaggggaagcgc
agtaagcgtttattgaagcgtttactgaagcaacaggagaatcgcagctctctgtcgctg
tggcgtgagtacggccatgtcgagtggttattaggaaacattgaggaagcacgcagggtt
tttgactccgccctcatgttgggcagagcctcgggtctacatgactccgccctctgcaac
ctctgtctgctttatgcacaattagaaatggaactcctgtgtccgggcggggctgaaagt
gaaaaggccacacccacttctgccacttcctctcgggcagtgtacatcctgaccaaatta
gcagaaggtgccacatacaggcctttcacaggagagatcagcgccgtaaccatactgaag
gcacgcaaagcctacgaacatgccgtatcagagggtgtggcatgtgagaaagcctgtgct
ctgattggctgttttggactgttccagtatttgacgctgggggtagatgcagctgatgcg
gtgttcactcaggccagagagaacctgacgtgcacacagcagcgcgaggccgtgtgtgtc
ctgcatgtggcgctgttacatcatcactccagtgtcagggtgtttccactgcggcgtctg
aggtcagcgctgagagacgcgctcacactgctgccgcacagcgcccccctgtggaggctc
cacctacaggccgacatccgccactacaatgctgccaacacccgccggttcctacacgcc
atcaccaagggcaaccacagcatcctgcctcgactgttcaccttaacaaccgaacagcag
aggaagaaacggatagacgctgtgctgaggtcgggtctcccagctgagtctctccctgtg
tttccggaaaccggcctttacaaccgcatccgtgcactgtttgaggttgccgtggcgacg
gagtgtggtgctcactgccctctgctgtggagacgctacatcaactttatggtgtgtaat
ggggatgtagagagaggaagaggaatcttctacagagccctacagcatgtcccctgggtg
aaagtgctgtacacagacgctgtgagcttgttccctgatcgtgtgcaggaggttttggat
ctgctgatggagaaggagctgagactccgaaccccgatggaggagctggacatcctgctg
gaggactaa

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (40)   
   KEGG ORTHOLOGY (1)   
   RefGene (35)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (4)   
   Pfam (4)   
All databases (50)   

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