KEGG   Ictalurus punctatus (channel catfish): 108279283
Entry
108279283         CDS       T04658                                 
Symbol
si:ch211-196i2.1
Name
(RefSeq) collagen alpha-1(I) chain isoform X1
  KO
K19721  collagen type V/XI/XXIV/XXVII, alpha
Organism
ipu  Ictalurus punctatus (channel catfish)
Pathway
ipu04820  Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:ipu00001]
 09140 Cellular Processes
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    108279283 (si:ch211-196i2.1)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   00536 Glycosaminoglycan binding proteins [BR:ipu00536]
    108279283 (si:ch211-196i2.1)
Glycosaminoglycan binding proteins [BR:ipu00536]
 Heparan sulfate / Heparin
  Extracellular matrix molecules
   108279283 (si:ch211-196i2.1)
SSDB
Motif
Pfam: Collagen COLFI Laminin_G_2 Laminin_G_3 Laminin_G_1
Other DBs
NCBI-GeneID: 108279283
NCBI-ProteinID: XP_017348895
Ensembl: ENSIPUG00000009183
UniProt: A0A2D0T2S7
Position
18:complement(3511022..3581040)
AA seq 1822 aa
MLLTVLAFVFFTLKVFIFRIWSTLIMAPKTTLWAVFVFSLAKCVSSSPTVILPTEWPEVE
LGSGMLQTEGINLLDQLWQVANSNNASVVLENQRCPVLHVGQYSTLSLPLGQVFGHRFND
EFSLLLQLRSSQHEDRSLFTLICPDGHILLQIRISAQSFTFISTQQRHYEFPVAVLSDGN
WHRVAVSVSTGRLALYVDCAMVESVDWAYKEGLGISTDGLIIVGGIIEGFEIPFEGDLKQ
VAFLMGDPDAARDQCDVYLSRCDGAAQKPQHFLPTQVPEELLLSSNNLEDLLESSDQEDK
DMRVMAMSGVRSRGPTRGDGTLPTGSKRPGSISRGDVFEVDEYTDLIDPNTLSKNGGLPH
KIHPPFAKGSKEAKPDSTSKLLDENITTEKSSPDKVFPKKPVDNTIIDLDVPPILKKPPA
GENSSREDPDSNLLKEGEERGTSTHVPPSSSTDRTNETHKIVPNVVLTSRTGGLVRGSDG
KMYRFHRGPPGPMGPPGEPGCPGSVGYPGFKGEKGRVGPEGRPGRVGNSGPPGPPGPPTL
YLWRNTAEEWAYFQQTSFFQLLYAGWPRELGLRGPQGELGKPGPQGPPGDPGERGPSGRV
GDMGDPGLPGVPGLPGIPGKDGENGLKGQQGAPGIPGPKGPLGYKGEFGSPGEKGDEGLI
GAEGPSGDVGEPGEKGYKGLPGPPGPTGPQGPHGIRGIEGLEGPPGTDGDDGFDGPPGPQ
GPPGPPGITGFIGAQGVNGSRGEPGPAGSTGPPGLQGAQGLDGQIGPPGPRGPQGQPGRE
GIPGPKGDPGPVGPTGLRGEPGFEGPVGALGTPGPKGFIGVRGKRGPEGDKGEAGPKGDK
GSKGDPGIQGSQGEQGPTGFPGFPGVKGQPGPRGIQGEDGDVGPQGKSGKEGLKGNKGQE
GHQGKPGPRGPMGRTGQRGHAGMPGSLGFPGPQGGIGAEGKPGTQGLQGATGNPGEKGLT
GFHGIAGEPGMDGPTGHPGPPGREGPMGSPGPPGEKGFSGKPGRVGPQGPVGMYGFPGST
GTRGRPGHVGEQGEPGVKGPPGPSGKPGPSGPTGPAGERGPPGLQGRQGDPGPQGIDGAR
GPPGLKGADGMMGRPGPDGSKGVPGDPGPRGPPGIPGSQGENGLPGPAGERGEKGILGPL
GEMGPSGLEGEQGPPGLGGPEGPLGRKGDQGERGLCGNIGPQGQKGDSGPQGTKGLQGPP
GPLGKEGDVGKPGDPGDPGSKGEKGERGPQGITGLEGPWGAVGERGERGPKGAKGNIGLL
GEPGLMGGVGFAGLKGLPGEVGPPGPVGANGPPGEKGEMGPSGLPGMPGNTGPPGIVGVA
GVRGETGKPGPQGTEGPVGPKGDVGPKGYAGPDGEKGDPGNLGEPGEQGSEGPPGIQGPP
ALPGLEGPSGESGLQGPSGPPGAQGRMGQPGPEGRQGMKGDKGDDGINGPPGMMGLIGRK
GKRGKAGLRGTRGPRGEKGEKGEMGEKGLPGWEGSMGIVGQRGENGEEGAKGEEGEKGDQ
GSPGPPGKDGLRGIQGPSGPPGLPGPKGDQGSIGPSGPRGTPGIPGIPGLFGAKGLKGFQ
GASGPAGKRGLPGPPGPPGPPGLSMNLTMTQIKDLMYVSDKPNYSLIQVLLDSLYRDVRL
LLDPPDGSKERPASTCLELWLCHPNYTSGFYYIDPNQGSPADALLAYCNFSEPRAETCLH
PKTAQLPMRAWLNDSVADNAFYWLSSLESGFTFEYTGLTVIQARFLRLQTNLAEQRVTYT
CSPGHRLGQTQRHARFLTSSIRQSYQGAVQDCVPAKEVDPGPRESVLQFVDKDLLPLRDV
AVFSSSSLSHEFGFTLGPVCFS
NT seq 5469 nt   +upstreamnt  +downstreamnt
atgttgctaacggttttggcgtttgttttttttactctcaaagtgtttattttccgcatt
tggtcaacactcattatggcaccgaaaaccacattgtgggctgtttttgttttttctttg
gctaaatgcgtcagttcaagtccaactgtcattttgccgactgagtggccggaagtggag
ctgggttccgggatgctgcagacagaaggcatcaatcttctagatcaactatggcaggtg
gccaacagcaataatgcctctgtagtgctggaaaatcagagatgtccagttctgcatgta
ggacagtactccactctctccctacccttaggccaagtgtttggccacagatttaacgat
gagttcagcctgctgctccagctacgcagttctcagcatgaagaccgtagcctctttacg
ctcatctgcccagacggtcacatcctcctccagatccgcatcagcgcccagtccttcacc
tttattagcacacagcagcgccattacgagtttcccgtggctgtgttgtctgatgggaat
tggcatcgggtggcagtgagtgtgtcgacaggccggttagcactttatgtggactgcgcc
atggtggaaagtgttgactgggcctacaaggagggtctgggaatcagcactgatgggctt
atcatagtgggaggaatcattgagggctttgaaataccatttgagggcgatctgaaacag
gtggcattcctgatgggggatcctgatgcagccagagatcagtgtgacgtgtatttatca
cgatgtgatggagctgctcagaaaccccaacacttcctacccactcaagttccagaagag
cttttgctgtcctcaaacaacttggaggatttactggagagttctgaccaagaggacaag
gacatgagagtcatggcaatgagtggtgtgagaagtcgtggccccacccgtggagatggc
acactccctacaggctcaaagcgacccggctccattagccgcggagacgtctttgaggtg
gatgagtacactgacctgatcgatcccaacaccctgtctaaaaatggtggcttaccccat
aagatccacccaccctttgctaaaggcagcaaggaggccaagccagactctacatctaaa
cttctagatgagaacatcaccactgagaaaagcagtcctgacaaagtgtttcctaaaaag
cctgtggataacaccattattgatctggatgttcctcccattttgaaaaaacctcctgct
ggagaaaactcaagccgcgaggaccctgactccaacctgctgaaggaaggagaggagaga
gggacatcaacccatgttccacctagctcgtccactgacagaacaaatgaaactcacaag
attgtcccaaatgtggttctcacaagtaggacggggggcctggtgcgaggctccgatggg
aagatgtatcgctttcatcgagggcctccagggccgatggggccccctggggaacccggt
tgtcctggcagtgtgggctatccagggttcaaaggtgaaaagggaagagtcggaccagag
ggtcgtcctggtcgggtcggaaactcagggccaccaggaccaccaggcccacccacttta
tatctgtggaggaacacagcagaggagtgggcttactttcagcaaacatcattcttccag
ctgttgtatgcaggttggcctagagaactgggtttacgtgggccacagggagaattggga
aaaccaggcccacagggaccaccgggtgatcctggagaaagaggaccgtcagggcgtgtg
ggagatatgggtgatcctggcctgccaggtgtaccaggcttaccagggattcctgggaaa
gatggagaaaatggcctgaaaggacaacagggggctcctggaatacctggcccaaagggc
cctcttggctataaaggagaatttggctcacctggtgaaaaaggagatgagggacttatt
ggagcagagggtccaagtggagatgtaggggaacctggagagaaaggatataaaggactg
cctgggccgcctggtcctactggccctcaagggccacatgggattagagggatcgagggc
cttgagggccctccagggacagatggggatgatggcttcgatggcccaccaggtccgcaa
ggtccaccaggccctccaggcatcacaggatttataggtgctcagggcgtaaatggctca
cggggggagcctgggcctgcaggaagcactggccccccagggctccagggtgctcaagga
ttggatggacagattgggcctccagggccacgaggcccacagggtcaacccggcagagaa
ggcatacctggcccgaaaggagatcctggaccggttgggcccacaggacttcggggagag
ccaggatttgagggccctgtgggtgcattaggaacgcccggtccaaaaggatttataggt
gttagaggtaagagggggcctgagggagacaagggtgaagccggaccaaaaggtgacaaa
gggagtaaaggagacccagggatacagggttctcagggcgaacagggaccaactggtttt
ccaggttttccaggggtcaaaggtcagccaggtccgagagggatacagggagaagatgga
gatgtcggtccgcaaggcaaatcaggaaaggaggggctgaagggcaacaagggacaggag
ggtcatcaaggaaagccaggaccaaggggaccaatgggtcgtacaggacaaagaggtcac
gctggaatgcctggatctctgggatttccaggtcctcaaggaggaatcggggctgaagga
aagcctggtacacagggacttcaaggcgctactggtaacccaggggaaaaaggactaacg
ggcttccatggcatcgctggggagcctggtatggatggaccaacaggacatcctggtcca
cctggacgagaaggacccatgggcagtccaggtccgccaggagagaagggtttctctgga
aagccaggaagagtgggacctcagggtcctgttggcatgtatggtttcccaggaagcaca
ggcacacgaggaagaccaggacacgtgggagaacagggagaacctggagtgaaaggaccc
ccaggacccagtggaaagcctggaccttcaggaccaactggcccagctggggagagagga
cctccaggactacaaggaagacagggcgatcctggacctcaaggaatagatggagcacgt
ggtcctccagggctgaagggagctgatgggatgatgggaagaccagggcctgatggcagt
aaaggagttccaggagatccaggcccaagagggcctccaggtatcccaggatctcaaggt
gaaaatgggttgcctggaccagctggggagagaggggagaagggaatattgggtccgctt
ggtgaaatggggccttctggacttgaaggtgaacagggtccaccaggcctaggcggacca
gaggggccactggggagaaaaggggatcagggagaacgaggcctctgtggcaacattggt
cctcagggacagaaaggagacagtggtccacagggtacaaaaggtctgcagggtccacct
ggaccactgggtaaagagggagatgttgggaaacctggagatcctggtgaccctgggtct
aaaggggaaaagggtgaaagaggcccacaggggattactggtttagaagggccctgggga
gctgtaggggaaagaggagagaggggaccaaaaggggccaagggcaacattggccttctg
ggtgagccaggtcttatgggtggagttggatttgctgggttgaaaggactccctggtgaa
gtgggaccaccagggccagtaggggcaaatggtccaccaggggaaaagggggagatgggg
ccatctggcttgcctggtatgcccggaaataccgggcctccgggaatagtgggtgtggca
ggagtgagaggagagactggaaaacccggaccacagggtactgaagggcctgtaggtcct
aaaggagacgtcggcccaaaaggctatgcagggccggatggagagaaaggagatccaggg
aacctaggagaaccaggagagcagggatcagagggccctcctggtattcaaggaccccct
gcattgcctggtctagaggggccctcaggagagtctggacttcagggaccatcaggtcca
ccaggagcccagggaagaatgggtcagccagggccagagggaagacaaggcatgaaagga
gacaagggagatgatggcattaatggaccaccaggaatgatgggtctcatcggtaggaag
gggaaaagaggcaaagctggtttaaggggcacaagaggaccaagaggagaaaagggagag
aaaggagagatgggtgagaaaggactcccaggatgggaggggtctatgggtattgtaggc
cagcgaggagagaatggtgaagaaggtgcaaaaggagaagagggagagaagggtgatcaa
gggtcacctggtccaccgggaaaagatggcttaaggggaatccagggtccttcgggccca
cctggactaccaggaccaaagggggatcagggaagtatcggtccatctggcccaagaggg
acacctggcataccaggaatacctggattgtttggagcaaagggcttgaagggttttcag
ggagcttctgggccagctggaaagaggggccttccaggaccacctggacccccaggacct
ccaggcctctctatgaacttgactatgacccaaattaaagatctgatgtatgtctcagac
aagcccaactactcactcatccaggtgctcttggattctctgtaccgtgacgtgaggttg
ttgctcgatccacctgatggcagtaaagagcgtccagcttccacctgcctggaactgtgg
ctgtgccaccccaactacaccagtgggttctattatatcgacccgaatcagggcagccct
gcagatgctcttttggcttactgcaacttttctgagccacgggcagagacgtgtcttcac
cccaaaactgcacagctgcccatgagagcatggttgaatgactctgtagcagacaatgct
ttctactggctcagttcccttgagagcggttttacgtttgaatacacagggctcacagtg
atccaggcccgttttctgagacttcagaccaacctggcagagcagagagtgacctacacc
tgctctcccggacacagactgggacagacacagcgacacgcacgctttctcaccagttca
atacggcagagctaccagggggcagttcaggattgtgtgcctgccaaggaagtggatcct
gggccacgagagtctgtgcttcagtttgtggataaagacctgctgcctctgcgggacgtc
gcagtgttttccagcagcagcctttcacatgagtttggcttcactctggggccggtgtgt
ttcagctag

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (77)   
   KEGG ORTHOLOGY (1)   
   RefGene (72)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
Protein sequence (3)   
   UniProt (1)   
   RefSeq(pep) (2)   
DNA sequence (6)   
   RefSeq(nuc) (2)   
   GenBank (2)   
   EMBL (2)   
Protein domain (5)   
   Pfam (5)   
All databases (95)   

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