KEGG   Janthinobacterium sp. B9-8: VN23_15090
Entry
VN23_15090        CDS       T04271                                 
Symbol
sbcB
Name
(GenBank) exodeoxyribonuclease I
  KO
K01141  exodeoxyribonuclease I [EC:3.1.11.1]
Organism
jab  Janthinobacterium sp. B9-8
Pathway
jab03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:jab00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03430 Mismatch repair
    VN23_15090 (sbcB)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:jab03400]
    VN23_15090 (sbcB)
Enzymes [BR:jab01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.11  Exodeoxyribonucleases producing 5'-phosphomonoesters
    3.1.11.1  exodeoxyribonuclease I
     VN23_15090 (sbcB)
DNA repair and recombination proteins [BR:jab03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    DNA exonucleases
     VN23_15090 (sbcB)
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    RecBC pathway proteins
     VN23_15090 (sbcB)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     Supressor
      VN23_15090 (sbcB)
SSDB
Motif
Pfam: Exonuc_X-T_C RNase_T
Other DBs
NCBI-ProteinID: AMC37107
UniProt: A0A109RWR7
Position
3358020..3359438
AA seq 472 aa
MHTFYWHDYETFGINPRRDRPSQFAGIRTDAELNEIGKPLNIFCKPTPDYLPDPESCLLT
GITPQQCLENGVDEFEFAARIEAELAMPSTVGLGYNSIRFDDEVTRFMFWRNLIEPYSRE
WQNDCSRWDLLDVVRTTYALRPEGIVWPTHDDGRPSFKLEHLTKANGISHEAAHDALSDV
RATIALARLIREKQPKLFDFCFSLRKKDKVLEQIGLPNAKPFLHISGMFSAERGCIALVW
PLAMHPNNKNEIIVWDLAFDPSEIFKLDAETIRLRMFSKTADLPEGVPRLPIKSIHINKS
PIVIGNLKTLSSERAAHWNIDVEQALAHAKIAESAPDMSAIWQQVFTSEHAKSDVDEDLY
GGFIGNNDKRLLAKLRNFSPEELAKERVSFEDSRLEEVLFRYRARNFPSTLTAAELQRWE
QHRAAKLFDGTGGARTLEAFGEAIDTLSENVSEQQADILSALFDYAESIMPD
NT seq 1419 nt   +upstreamnt  +downstreamnt
atgcataccttttactggcacgattacgaaacatttggcatcaacccacgccgtgatcgc
ccttcgcaatttgctggcattcgcaccgatgcagagttaaatgaaatcggcaagccactc
aatattttctgtaaacccacacctgactatctgcccgatcctgaatcctgcctgcttacg
ggcattacgcctcagcagtgcttagaaaatggtgtagacgagtttgagtttgcggcccgt
atcgaggccgagctggctatgcctagcacggtagggttaggttataactcgattcgtttt
gacgatgaagtcacgcgctttatgttctggcgcaatctgatcgagccctattcgcgtgaa
tggcaaaatgattgcagccgctgggatttactcgatgtggtacgcaccacctatgcgctg
cgccccgaaggcattgtttggccaacacacgacgatggccgcccttccttcaaattagaa
catctcaccaaggccaacggcatcagccacgaagcggcgcacgatgcgctatctgatgtg
cgtgccaccattgcactggcacggctaatccgtgagaaacaacccaagctattcgatttt
tgcttttcactgcgtaaaaaagacaaggtgctagagcaaattggcctccccaatgccaaa
cctttcctacatatcagcggcatgttttccgcagagcgcggctgcatcgcgctggtttgg
ccactcgccatgcatcccaacaataaaaacgaaatcatcgtttgggatttagcctttgat
ccaagtgagattttcaagctggacgcggaaaccatccgcctgcgtatgttcagcaaaacg
gctgatttacccgaaggtgtccctcgcctgccgattaaaagcatccatattaataagtcg
cccattgtgattggcaatctcaaaacattaagtagtgagcgagctgcacattggaatatc
gacgtagaacaggccttggctcacgccaaaatagccgaaagcgcccccgatatgagcgca
atctggcagcaggtgtttacgagcgagcatgcaaaaagcgatgtggatgaagatttatac
ggcggatttattggcaataatgataagcgtcttctagctaagctacgcaactttagcccc
gaagagctggctaaagagcgggtgagctttgaagatagccgccttgaagaagtgcttttc
cgctaccgcgccagaaactttccaagcacattaaccgcggcagaattgcaacgctgggag
caacaccgtgcagcaaagttgttcgatggcacaggtggcgcacgcacgctggaagccttt
ggtgaagcaattgatacgctatcggaaaacgtcagcgagcagcaggcggacattctttct
gcactctttgattacgccgaaagcattatgcccgactag

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (2)   
   Pfam (2)   
All databases (12)   

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