KEGG   Jatropha curcas (Barbados nut): 105634868
Entry
105634868         CDS       T03922                                 
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 15 isoform X1
  KO
K12812  ATP-dependent RNA helicase UAP56/SUB2 [EC:5.6.2.7]
Organism
jcu  Jatropha curcas (Barbados nut)
Pathway
jcu03013  Nucleocytoplasmic transport
jcu03015  mRNA surveillance pathway
jcu03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:jcu00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    105634868
  09122 Translation
   03013 Nucleocytoplasmic transport
    105634868
   03015 mRNA surveillance pathway
    105634868
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:jcu03019]
    105634868
   03041 Spliceosome [BR:jcu03041]
    105634868
Enzymes [BR:jcu01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     105634868
Messenger RNA biogenesis [BR:jcu03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    EJC complex
     105634868
Spliceosome [BR:jcu03041]
 Complex C
  Other components
   EJC/TREX
    105634868
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    105634868
SSDB
Motif
Pfam: DEAD Helicase_C ResIII CMS1
Other DBs
NCBI-GeneID: 105634868
NCBI-ProteinID: XP_012073200
UniProt: A0A067KLR9
Position
Unknown
AA seq 428 aa
MGEVKDNDAYEEELLDYEEEDEKAPDSVSAKAGAESAKKGYVGIHSSGFRDFLLKPELLR
AIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEPVAGQVAALV
LCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKVHKDILKNECPHIVVGTPGRILA
LARDKDLGLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPV
CKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLTEMEKNRKLNDLLDALDFNQVVIFVKSVN
RAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGHKRILVATDLVGRGIDIERVNI
VVNYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDVLNQVQARFEVDIKELPEQI
DTSTYMPS
NT seq 1287 nt   +upstreamnt  +downstreamnt
atgggtgaagtaaaagacaacgacgcttacgaggaggagctgctcgactatgaggaagaa
gacgaaaaggcccctgactccgtctctgctaaggccggagctgaatctgctaaaaagggc
tatgttggaattcacagttcaggattcagagacttcctgttgaagccagagcttctgcga
gccattgtagattctggatttgaacatccttcagaagtgcaacatgagtgcatccctcaa
gctatccttggaatggatgtcatttgccaagcaaaatctgggatggggaagactgctgtt
tttgttctatctactctgcagcagattgaacctgttgcgggtcaagttgctgcgcttgtt
ctttgccatacaagagaattagcatatcagatatgccatgaatttgagagattcagtacc
tatttgcctgatataaaggttgccgtcttttatggtggtgtcaatatcaaggttcacaag
gatatactaaagaatgaatgccctcatattgttgttggaactcctggaagaatattggct
cttgcacgagataaagaccttgggttgaagaatgtgaggcattttatcctagatgaatgt
gacaagatgcttgaatcacttgacatgaggagagatgtgcaggagattttcaagatgact
cctcatgataagcaagttatgatgttttcggcgacacttagcaaggaaattcgccctgtt
tgcaagaaattcatgcaagatcctatggaaatttatgtagacgatgaggccaagttgact
cttcatggtcttgtacagcactacatcaaattgactgagatggagaaaaatcgcaagttg
aatgatctgcttgatgccttggacttcaatcaagtagtcatctttgtgaaaagtgtgaac
agagcagctgagctgaacaaattattggtagaatgtaacttcccctccatatgcatccac
tctggaatgtctcaggaagaaaggttgacaaggtataagggtttcaaggaggggcataag
cgaattcttgtggcaactgatttggttggtagaggaattgatattgaacgtgtaaacatt
gttgtcaactatgacatgccagattctgccgatacttacctgcatagggtagggagagcc
ggtaggtttggcaccaagggacttgcaattacatttgtctcatctgcatctgactctgat
gtgctgaatcaggttcaagcaaggtttgaggtggatataaaggagcttcctgagcagatt
gatacttctacatacatgccatcgtga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (3)   
   KEGG PATHWAY (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (3)   
   UniProt (1)   
   RefSeq(pep) (2)   
DNA sequence (6)   
   RefSeq(nuc) (2)   
   GenBank (2)   
   EMBL (2)   
Protein domain (4)   
   Pfam (4)   
All databases (26)   

Download RDF
DBGET integrated database retrieval system