KEGG   Jonesia denitrificans: Jden_1038
Entry
Jden_1038         CDS       T00972                                 
Name
(GenBank) Formamidopyrimidine-DNA glycosylase catalytic domain protein
  KO
K05522  endonuclease VIII [EC:3.2.2.- 4.2.99.18]
Organism
jde  Jonesia denitrificans
Pathway
jde03410  Base excision repair
Brite
KEGG Orthology (KO) [BR:jde00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    Jden_1038
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:jde03400]
    Jden_1038
Enzymes [BR:jde01000]
 4. Lyases
  4.2  Carbon-oxygen lyases
   4.2.99  Other carbon-oxygen lyases
    4.2.99.18  DNA-(apurinic or apyrimidinic site) lyase
     Jden_1038
DNA repair and recombination proteins [BR:jde03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA glycosylases
     Jden_1038
SSDB
Motif
Pfam: H2TH Fapy_DNA_glyco zf-FPG_IleRS
Other DBs
NCBI-ProteinID: ACV08694
UniProt: C7R3F8
Position
complement(1102757..1103611)
AA seq 284 aa
MPEGDTVLSVANRLHEVLGGHSLTRVDLRWPSVSVDAFNRGVVHDVDAYAKHLFVRFASG
VSLHTHLRMDGVWRVVPTGSREAQASSPTVRAVLATSEWTCVGYELGMMDIVPTARERDL
IAHLGPDILADQCVPTHLLDQARADPARFLAPRRAHTSLLVSDRDWIEALSRFAAQPQTR
PIGETLLDQSVVSGIGTIFMAEGLFTHRISPMRPLADTPLVPLLASIRGHLIRGVVRPVA
GRRIHVHSRRGQPCMRCGTPIARRLVGPPTAQRPAFYCPTCQHR
NT seq 855 nt   +upstreamnt  +downstreamnt
atgcccgaaggtgacaccgtgcttagtgtcgcgaatcgacttcatgaggtcctcggcggg
cactcattaacccgcgttgatctgcggtggccttcggtgtcagtggacgcttttaaccgc
ggtgtcgtccacgacgttgatgcctatgcgaaacacctttttgtcaggtttgcatctggc
gtctcccttcacacacatctgcgtatggatggtgtctggcgcgttgtccccacgggaagc
cgtgaagcacaggcaagttcgcccacagtgcgggctgtgcttgccacatctgagtggacg
tgtgttggatatgaactcggcatgatggatattgttcccactgctcgagaacgtgatctg
attgcgcatcttggtcctgacatccttgcagaccagtgtgttcccactcacctcctcgac
caggcccgtgcggaccctgcccgcttccttgccccacggcgcgcacacacatctctgctc
gtgtcggacagagactggattgaggcgttgtctcggtttgcagcgcagccgcagacacgc
cccattggggaaacgcttcttgatcagagtgtggtctctggtatcggtaccattttcatg
gcagagggtttgttcacacaccgaatatcgccgatgcgccctctggctgatactccgctc
gtcccgttgctcgcgagtatccgcgggcatcttattcgaggtgttgtgcgtcctgttgca
gggcgtcgtattcatgtccacagtcggcgcgggcaaccatgcatgcgctgcggaaccccc
atcgcgcggcgtcttgttggccctcccactgcacaacggcccgctttttactgtccaacc
tgccaacataggtga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (12)   
   KEGG ORTHOLOGY (1)   
   RefGene (9)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (3)   
   Pfam (3)   
All databases (22)   

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