KEGG   Juglans regia (English walnut): 108990535
Entry
108990535         CDS       T05245                                 
Name
(RefSeq) CCR4-NOT transcription complex subunit 1-like
  KO
K12604  CCR4-NOT transcription complex subunit 1
Organism
jre  Juglans regia (English walnut)
Pathway
jre03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:jre00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    108990535
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:jre03019]
    108990535
Messenger RNA biogenesis [BR:jre03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     108990535
  mRNA degradation factors
   3'-5' decay
    Ccr4-NOT complex
     108990535
SSDB
Motif
Pfam: Not1 CNOT1_CAF1_bind CNOT1_TTP_bind DUF3819 CNOT1_HEAT PARG_cat_microb
Other DBs
NCBI-GeneID: 108990535
NCBI-ProteinID: XP_035546238
UniProt: A0A6P9EQT8
Position
5:2519516..2550592
AA seq 2550 aa
MVEECVGDFTVACSFMNLEDCFQWAFASVYGPNIDSERRPLWEELAGLLSWWELPSFIGG
DFNITRYPSERSGVPHITPAVREFSDFILEQELMAIPLTGALSKMIGVVEGGFISGFSVG
EANTGSLNISHLLFANDTLVFCEANHDHIRALKALILCFEVVSELKENWGKSDFVEYGIE
GSIILLQTCIDHLSFYITDSKDMQLDSVVASIFKYLLDKPNFSTVFFESLRDTDINEGTI
ENFSNALHLSVSEKIGFGLALSDSENLDTRISGKNFSMAQIQEYCANPVLVNSSEQIQNI
VMFLQRSEGLSKHVDFFMQMLSLVKSNEVTPFVLSPLFPDELREDYFLRNVDAFHESRED
DFDSILAEMEKEMSMGDIIKELGYGCTANSSQCKEIFSFFLPLTEITLSKVLGTIARTQA
GLDDNQNTFSTFSLALGCSTLSDLPLLSSWNIDVLIDTIKQLAPGTNWIRVIENMDHEGF
YFPNWEAFSFFMSVYRHVCEEPFPLHAICGSVWKNAEGQLSFLKYAISAPPDVFTFAHSV
RQLSYVDGVHSHKLQFDHSNYSWLCLDLLDVLCQLAERGHATSVRSMLEYPIKHCPEVLL
LGMAQINTAYNLLQYEVSFTIFPIIVKHAMGSGMILHLWHVNPNLVLRGFLDSLNYDPDN
MTRILDICQELKIISAVLDAIPSSYAIRLAALASRKEFVDLEKWLGYNLKTYKDIFFEEC
LNFLKEIFGGSHDFSAKTFHHSGAVLNLYVETSSTFVKVLKAHADLINSSHLAEEMEKLS
LTFMDSSPRLQNGGATDSSTSDGYADDIESEANSYFHQMFSGQLTIDAMVQMLAQFKESS
VIREQSIFECMVANLFEEYRFFPKYPERQLKIAAVLFGSVIKHQLVTHLTLGIALRGVLD
ALRKPADSKMFVFGTLALEQFVDRLIEWPQYCNHILQISHLRGTHSELVAFIEQALARIS
AGHSDTDGGSHAVINHHGSNQASLGNLELNGSSIIQPGQQLPSPLQLQQRHESVEDHHHK
AAAASSSDVKPLLSSVGHSSAVNLGDTSTIQKSQLAVSAPSMLSSSSGFVRPSRAVTSTR
FGSALNIETLVAAAEKRDTPIEAPASEIQDKISFIINNISVANIEAKAKEFTEIFKEQCY
PWFAQYMVMKRASIEPNFHDLYLKFLDKVNSKTLNKEIVQASYENCKVLLGSELIKSSSE
ERSLLKNLGSWLGKLTIGRNQVLRAREIDPKSLIIEAYEKGLMIAVIPFTSKILEPCQSS
LAYQPPNPWTMGILGLLSEIYSMLNLKMNLKFDIEVLFKNLGVDMKDVTPTSLLKDRKRE
IEGNPDFSNKDVGASQPQLVAEMKSGMVSPMNQIELPLDVGGTSNSGGPTHLLSQYAASL
HLPSGTLMEDEKLSALGLADQLPSAQGLLQATPSQSPFSISQLSAPIPNIGTHVIINQKL
SALGLHLHFQRAVPIAMDRAIKEIVSGIVQRSVSIATQTTKELVLKDYAMELDETRIFNA
AHLMVASLAGSLAHVTCKEPLRGSISSQLRNSLQGLNIANELLEQAVQLVTNDNLDLGCA
VIEQAATDKAIQTIDGEIAQQLALRRKHREGVGSTFFDANMYTQGSMGVVPEALRLKSGH
LSLSQQRVYEDFVRLPWQNQSSQSSHAMSSGPASSASTGLTGAYGPASGQLNLGYSSSTG
GTGFEAASRAQEESMESSSALHLSGSSIHIGVADAVTQISSENDSAIASFPLTASASELL
SLESSDVAKESGDASQSLPSPVTTERLGSSISEPTLATRDALDKYQIVAQKLEALLNNGG
KDTEIQGVIAEVPEIIIQCISRDEAALAVAQKVFRGLYENGSNKIHVGAHLAILTAIRDV
CKLVFKELTSWVIYSDEERKFNKDITVGLIHSELLNLAEYNVHMAKLIDGGRNKAATDFA
ISLLQTLVIEESKVISELHNLVDALAKVAAKPGPPESLQQLVELVKNPAAGVVAISGVNV
GKEDKARQLKEKKASGYATASREDYNNAETVEPDPAGFGEQVSFLFAEWYRICELPGAND
AASTHFILQLHQNGLLKGDDVTDRFFHLLTEISVAHCLSSEVINSATLQSPQQVQNLSFL
AVDIYAKLVFSILKGSSKFFLLSKILAVTVRFIQKNADEKKESFNPRPYFRLFINLLLDL
SSLDPVIDGANFQILAVFANAFHALQPLKVPAFSFAWLELVSHRSFMPKMLTVNGQKGWP
YIQRMLVDLFQFMEPFLRNAELGVPVHFLYKGTLRVLLVLLHDFPEFLCDYHFTFCDVIP
PSCIQMRNIILSAFPRNMRLPDPSTPNLKIDLLAEISQSPRILSEVDAALKAKQMKVDVD
EYLKTRQPGSFLTDLKQKLLLSPSDAAAAGTHHNVPLINSLVLYVGMQAIQQLQPKTPHA
QSTANTVPLAVFLVGAALDIFQALVVDLDTEGRYLFLNAVANQLRYPNTHTHYFSFILLY
LFAESNQETIQEQITRVLLERLIVNRPHPWGLLITFIELIKNPRYNFWNRAFIRCAPEIE
KLFESVSRSCGGPKSVDESMVSGWVSENAH
NT seq 7653 nt   +upstreamnt  +downstreamnt
atggtagaggaatgtgttggtgacttcactgtggcttgttcatttatgaacctagaagac
tgtttccaatgggcatttgctagtgtttatggcccaaatattgactcggagagaagacca
ttatgggaagaattggcaggacttcttagttggtgggagttaccaagtttcatagggggt
gattttaacataactcgctacccaagcgagaggtcgggtgtgccccacatcactcccgcc
gtgagggagttttctgattttattttagaacaagagcttatggctattccattaacagga
gcacttagcaaaatgatcggtgtggtggagggtggcttcatatccggtttttcagtgggg
gaagccaatactggctctctcaatatttctcacctcttatttgccaatgatacccttgta
ttttgcgaggccaaccatgatcatatccgtgcactgaaggctctcattttatgctttgaa
gtcgtttccgaattgaaggagaactggggcaaatcagattttgttgaatatggaattgag
ggcagcattattctgcttcaaacatgcattgatcacctgagcttttacatcacagactca
aaggacatgcagctggattcagttgttgcatcaatttttaaatacttgttggacaaacca
aattttagcacagtgttttttgagtcgctaagggatacagatatcaatgaaggaaccatt
gagaatttctccaatgcacttcacctatctgtatctgaaaaaattggctttggccttgct
ttgtcagattctgaaaatcttgataccaggatttctggcaaaaatttttctatggctcag
attcaggaatactgtgccaatcctgttttggtgaattcctctgagcaaattcagaatatt
gttatgttccttcagcgctctgagggcctttccaagcatgtagatttctttatgcagatg
ttatctttagtgaagtcgaatgaagtcaccccatttgttttaagtccattgtttccagat
gaattgcgtgaggattattttctgaggaatgtggatgcgttccatgaatctagagaagat
gattttgattctattttagcagaaatggagaaggaaatgagcatgggagatattataaag
gaactaggttatgggtgcaccgcaaattcatcacagtgcaaagagattttctcttttttc
ttgccactgactgagattactttgtctaaagttcttggcacaattgctcgaacccaagct
ggtcttgatgacaatcagaacacattttcgacttttagcttggctctgggttgcagcact
ttgtctgatctgccattgttgagctcctggaatattgatgttctcatagatacaatcaag
caacttgctcctggaaccaattggatacgtgtcattgaaaatatggaccacgaagggttc
tactttcctaattgggaggcattctctttttttatgtcagtatataggcatgtgtgcgag
gagccattccctctccatgccatttgtgggtctgtttggaagaatgctgagggtcagcta
tcttttcttaaatatgctatttcagctccaccagatgtatttacgtttgcccattctgtg
aggcagctgtcttatgtcgatggtgtgcatagccataagctacaatttgatcactcgaat
tattcatggttgtgtcttgacctcttggacgtactatgtcaactagctgaaaggggtcac
gccacttcagttcggtcaatgcttgaatatcctattaaacattgtcctgaagtcttactt
cttgggatggcacaaataaatactgcttataacctcctccaatatgaagtgtctttcact
attttccccattatagttaaacatgccatgggtagtggaatgattcttcacctttggcat
gttaaccccaacttggtattgcggggatttttagattctctcaactacgatccagacaac
atgactagaatattggacatctgccaagagctaaagattatatcggcagtgttagatgcg
attccttcttcttatgccataagattggcagcgcttgcctcaagaaaagaattcgtagac
cttgagaagtggctcggttataatttaaaaacatataaagatattttctttgaggagtgc
ctcaacttcttaaaggagatttttggcggatcacatgatttttctgccaaaacgttccat
cactctggtgctgtcttgaatctttatgtggagactagttctacttttgttaaggttctt
aaagctcatgctgacttgattaactcaagccaccttgccgaggaaatggaaaagttgtct
ttaacatttatggattctagtccaaggttgcagaatggtggggctacagattcttcaacg
tctgatggatatgcggatgatattgagagtgaagcaaactcttacttccaccaaatgttt
tctggtcagttgaccattgatgcaatggtccaaatgcttgctcaattcaaggaatcttct
gtgataagggaacaatcaatttttgagtgcatggttgcaaatctgtttgaggagtacaga
tttttccccaagtatcctgaaaggcagctcaaaattgctgcagttctgtttggctctgtt
atcaagcaccagcttgtgactcatctcactctagggattgctctgcgtggtgttttagat
gcactacgcaaacctgcagattcaaaaatgttcgtgtttgggactctggctttggagcag
tttgtggatcgactgattgaatggcctcagtattgcaatcatatcttacagatatcccat
ttgcgtggtactcattcagaacttgttgccttcattgaacaggctcttgccaggatttca
gctggccattcagacacggatggaggcagccatgctgttattaatcaccatggctctaat
caggcttccttgggaaatttggagttaaatggctctagcatcatacagcctgggcagcag
cttccgtccccactgcagcttcaacagagacatgaaagtgtcgaggatcatcatcataaa
gccgcggcagcatcatctagtgatgtgaagccactcttatcttctgtagggcactcttca
gctgttaatttaggtgatacttccactattcaaaagtcacagcttgctgtcagtgcccct
tcaatgctatcttcctcatctggctttgttcgtccttcacgtgcggttacttctaccagg
tttggctctgctctgaacattgaaacacttgttgccgctgctgagaaaagagacactccc
atagaggctccagcatcagagattcaagataaaatatcttttatcatcaataatatctca
gttgctaatattgaagctaaagcaaaagaattcactgaaatttttaaagaacagtgctat
ccctggtttgcgcaatatatggttatgaaaagagcaagcattgagccaaattttcatgac
ttgtatttgaagtttctggacaaggttaattcaaagactttgaataaagagattgttcaa
gccagttatgagaactgcaaggttcttttagggtctgagcttataaagtcaagttctgaa
gagcgttcattgcttaaaaacttaggtagttggcttgggaagctaacaattgggagaaat
caagttttaagggctcgtgaaatagatcctaaatcattgattatagaggcatatgagaaa
ggattgatgattgcagtaataccatttacttctaagattctggaaccgtgccaaagcagc
ctagcatatcaacctcccaatccttggaccatgggcattcttgggttactttcggagata
tattcaatgctgaacttgaaaatgaaccttaagtttgacattgaggtcctattcaagaac
ctaggtgttgatatgaaggatgttacaccgacctctcttctcaaggatcgaaaaagggaa
attgaagggaatcctgatttttctaacaaagatgttggagcatcccaaccacagttagtt
gctgaaatgaaatccggaatggtatctccaatgaatcaaattgagctaccgcttgatgtt
ggtggtacatctaattctggtggccccacacatttattatctcagtatgctgcttccctt
catctcccttctggtacgttgatggaggatgaaaagctatcagctttaggactggctgat
cagctcccctctgctcaaggactattacaagccactccatcccagtcacctttctccatt
agtcagctttctgctccaataccaaacattggaacccatgttattatcaaccagaagctc
agtgctttgggcttacacctgcatttccagagggcagttccaattgcgatggatagagct
attaaagagatagtatctggtattgttcagcgcagtgtatctatagcaactcaaacaaca
aaggagcttgttttaaaggattatgccatggaattggatgagacacgcatatttaatgca
gcacacttaatggttgcaagtctggctggaagtttagctcatgtaacatgcaaggaaccc
ttacgtggttcaatatcaagtcaactgaggaattcacttcagggtctgaatattgcaaat
gaacttttagaacaagctgtacaacttgttaccaatgacaaccttgatcttggctgtgca
gtcattgaacaggctgccactgataaggcaatacaaaccattgatggggaaatagctcaa
caacttgctttgagaaggaagcatagagagggtgttggttccacattttttgatgcaaac
atgtatacacaaggttcaatgggtgttgtaccagaggccctccgccttaaatctggtcat
ctgtccctttctcaacagcgagtttatgaggactttgttcggcttccctggcaaaaccaa
tctagccagagttcacatgctatgtcttcaggtcctgcttcatccgccagtactggtctg
actggtgcatatggcccagcatctggacaactaaatcttggctactcttctagcacagga
ggcacaggatttgaagcagcctctagggcacaggaggagtcaatggaatctagttcagct
ctgcatcttagtggttcctcaattcacattggagttgcggatgctgttacccagattagt
tctgaaaatgattctgccatcgcttcatttcctctaactgcttcagcctctgagttgctt
tcattggagtcctctgatgttgcaaaagaatctggagatgcttcacagtcattaccttca
ccagtcaccactgagcgccttggaagtagcatatcagaacccacactcgctactagggat
gcattggataagtaccagattgttgcacagaagttggaagctttgctaaataacggtgga
aaagatactgaaattcagggagtcattgctgaagttcctgaaatcataatccaatgcatt
agtcgagatgaagctgccttggctgttgcacaaaaggttttcagaggtttatacgagaat
gggtcaaataagattcatgttggtgctcatcttgcaattctgactgctattcgtgatgtt
tgcaagcttgtttttaaggagctcactagctgggttatttactctgatgaggaacggaag
ttcaacaaagatataactgttggccttattcacagtgaattgctaaaccttgccgagtac
aatgttcacatggcaaaactaattgatgggggcaggaataaggctgcaaccgattttgca
atttcccttctgcaaactttagtcatcgaagaatctaaagttatttctgaactacacaat
cttgttgatgctttggcaaaggttgctgcaaagcctgggcctcctgagtcactacaacag
ctggttgagcttgtgaagaatcctgctgctggtgtggttgctatatctggtgttaatgtg
ggaaaggaggataaagccaggcaattaaaggaaaaaaaggcttctgggtatgctactgcc
agcagggaggactataataatgcagaaactgtagagccagatcctgctggttttggtgag
caggtttcttttctgtttgcggaatggtaccggatatgtgagctgcctggggcaaatgat
gcagcctctacccatttcatcttacagttgcatcagaatggactactgaagggggatgat
gtgacggatcgctttttccacctcctgacggaaatttctgttgcacattgtctttcttct
gaggtaataaattcagccacgttgcaatcaccccaacaagtgcagaatctttccttcctt
gcagttgatatctatgcaaaacttgtattttcaatcctgaagggatcaagcaaattcttt
cttttgtctaagattctggcagtgactgttagattcatccagaaaaatgctgacgagaag
aaagaatcttttaatccaagaccctattttagattgttcattaacttgctgctggatctg
agttccctggatcctgttattgatggtgcaaactttcagattttggcagtgtttgcaaat
gcatttcatgctttgcagccccttaaagttcctgcattcagctttgcatggcttgagttg
gtgagtcacaggagtttcatgccaaaaatgctcactgtaaatggtcagaagggttggcct
tacatccagcgcatgctggtagacttgttccaattcatggagccatttttgagaaatgct
gagcttggtgtgccggttcattttctgtataaaggcacacttagggtactgttagtgttg
cttcatgattttcctgagttcctgtgtgattaccatttcaccttctgtgatgtaattcct
ccgagctgcatacaaatgcgaaatattatccttagtgcatttccccgtaatatgaggctg
ccggatccatctactcccaatttaaagattgatttacttgcggaaatcagtcagtcccca
cgcattctttctgaggttgatgcagctcttaaagcaaagcagatgaaggttgatgtagac
gagtatctcaagactaggcaacctgggtcctttctgactgatctgaagcagaaactcctc
ctctcaccaagtgatgctgccgctgctggtacccatcacaatgtgcccttgatcaactcc
ctcgtgctttatgttggcatgcaggccatccagcagttgcagccgaaaactcctcatgct
cagtccactgccaacactgtcccattggctgtgttcttggttggtgctgccttggacatc
ttccaggctctagtagtggacctagacaccgaaggacgctatctctttctcaatgcagtt
gctaatcaattgcgctatccaaatacccatacgcattatttctccttcatccttctttac
ttgtttgccgaatcaaaccaggaaacaatacaggagcaaataacaagagtgctgttagag
cggttgattgttaatcgacctcatccatggggccttctgattactttcatcgagttaatt
aagaatccaagatacaacttttggaatcgagccttcattaggtgtgcccccgagattgaa
aagctgttcgaatcagtgtcaagatcctgtgggggaccaaaatcagtggatgagagtatg
gtttctggttgggtatctgaaaacgcccactga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (50)   
   KEGG ORTHOLOGY (1)   
   RefGene (46)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (6)   
   Pfam (6)   
All databases (63)   

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