KEGG   Juglans regia (English walnut): 109006071
Entry
109006071         CDS       T05245                                 
Name
(RefSeq) E3 ubiquitin-protein ligase COP1
  KO
K10143  E3 ubiquitin-protein ligase RFWD2 [EC:2.3.2.27]
Organism
jre  Juglans regia (English walnut)
Pathway
jre04120  Ubiquitin mediated proteolysis
jre04712  Circadian rhythm - plant
Brite
KEGG Orthology (KO) [BR:jre00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    109006071
 09150 Organismal Systems
  09159 Environmental adaptation
   04712 Circadian rhythm - plant
    109006071
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:jre04121]
    109006071
Enzymes [BR:jre01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     109006071
Ubiquitin system [BR:jre04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   Other single Ring-finger type E3
    109006071
  Multi subunit Ring-finger type E3
   Cul4 complex
    Target recognizing subunit (DCAF)
     109006071
SSDB
Motif
Pfam: WD40 zf-C3HC4_2 WD40_like zf-C3HC4 zf-C3HC4_3 zf-RING_2 zf-RING_UBOX zf-C3HC4_4 DUF1664 zf-rbx1 A24_N_bact zf-RING_5
Other DBs
NCBI-GeneID: 109006071
NCBI-ProteinID: XP_018840782
UniProt: A0A2I4GA60
Position
1:16778906..16791630
AA seq 687 aa
MEEVSTGTGPLVPAVVKPEPEREREPKPKASPSSFSAAQHPDEEPEGGSGWGSEELDKDL
LCPICMQTIKDAFLTVCGHSFCYMCIVIHLRNKSDCPCCSHHLTLHQLFPNFLLDKLLKK
ASARQISRTASPVEQFRHALQQGCEVSIKELDTLLSLLTDKKRKMEQEEAERNMQILLTF
LHHLRRQKIDELNEVQSDLQFIKEDITSVERHRMELYRARDKYSVKLHMLGDDSSARKSW
SSSMDKNSSDLISSSLTARGVMATRNLQNKKADGKSQVTSQGLPRKDALSGSESQHINQS
GLSVARKKRVHAQFSDLQECYLQKRRQLANKPLSQQEKDKSIIPREGYNEGLADFQSVLT
TFTRYSRLRVIAELRHGNLVHSANIVSSIEFDRDDELFATAGVSRCIKVFDFSTVVNEPA
DMHYPVVEMATRSKLSCLSWNNFTKNHIASSDYEGIVTVWDVITRQSVMEYEEHEKRAWS
VDFSRTEPSMLVSGSDDYKVKVWCTNQEASVLNIDMKANICCVKYNPGSSNYIAVGSADH
QIHYYDLRNISQPLHVFSGHRKAVSYVKFLSNNELASASTDSTLRLWDVKENLPVRTFRG
HTNEKNFVGLTVNSEYIACGSETNEVFVYHKEISRPVTWHKFSSPDSHDADDEVASYFIS
AVCWKSDSPTMLTANSQGTIKVLVLAA
NT seq 2064 nt   +upstreamnt  +downstreamnt
atggaggaagtgtcaacgggcacggggcctttagtcccggcggtggtgaagccggagccg
gagcgggagcgggagccgaagcctaaggcatctccatcttccttctcggcggcgcagcat
ccggatgaagaaccagaaggaggctcgggctggggatcggaggagctggacaaggacttg
ctttgtccgatatgcatgcagacgatcaaggacgcgttcctcaccgtgtgcggtcacagc
ttctgctatatgtgcatcgtcatacacctccgcaacaagagtgactgcccctgctgctcc
caccacctcaccctccaccagttattccccaacttcttgctcgataagctactgaagaag
gcttctgctcgtcaaatatccagaaccgcttctcctgtggaacaatttcgtcacgcatta
cagcagggttgtgaagtatcaattaaggagctagacacccttttgtcactcctcacagac
aagaagaggaaaatggaacaagaagaagccgagagaaatatgcaaatattgctaaccttc
ttgcatcatttgaggcgccaaaaaattgacgagttgaatgaggtacaatctgatctccag
tttattaaagaggacataacttccgtagagagacatagaatggagttgtatcgagcgagg
gacaagtactctgtcaaactgcatatgcttggagatgactctagtgcgagaaaatcatgg
tcttcatcaatggataagaacagcagtgaccttatctccagttctctaactgcacgtgga
gtgatggctacaaggaatctccaaaataagaaagcagatggaaagtctcaagtaacctct
caggggctaccgagaaaggatgctttgagtggctcagaatcacagcacatcaaccaatca
ggtttatctgtagcaagaaaaaaacgggtccatgctcagttcagtgacctacaagagtgt
tacctgcaaaagagacgtcagttggcaaacaaaccacttagccagcaggagaaggataaa
agcattataccccgagagggttataatgagggtcttgcagatttccaatcggttttgact
accttcacgcggtacagtcgattgagggtcattgcggaacttaggcatggtaatctagtc
cactcagcgaatatagtatcaagcattgaatttgaccgtgacgatgagctgtttgctact
gctggagtatcccggtgcataaaggtttttgacttctccacggttgtgaatgaacctgct
gatatgcactatcccgttgtggagatggcaacgcgttcaaaactcagctgcttgagttgg
aacaattttactaagaaccacattgccagtagtgattatgagggaattgtgaccgtttgg
gatgtaatcacccgacagagtgtgatggagtatgaagagcatgaaaaacgtgcgtggagt
gttgatttttcgcgtacagaaccatcgatgcttgtatccggtagtgatgattataaggtc
aaagtttggtgcacgaatcaggaagctagtgttcttaacattgacatgaaagcaaatata
tgctgtgtcaagtataatcctggatctagcaattacattgcggttggttctgcagatcat
cagattcactactatgatttaagaaacatcagtcagccactccatgtgttcagcgggcac
aggaaagccgtttcatatgtgaagttcttgtcaaataatgagcttgcttctgcttctaca
gacagcacactgcggctatgggatgtaaaggagaacttgccagttcgtacctttagaggc
cacacaaacgagaaaaactttgtgggcctgacagtaaatagcgagtacattgcatgtggc
agcgagacaaatgaagtgtttgtctaccataaggaaatctccaggcccgtgacttggcat
aaatttagttctcccgattcgcacgatgctgatgatgaggttgcgtcttacttcattagt
gctgtatgctggaagagtgatagccctaccatgcttactgctaatagtcagggcaccatc
aaggtgctagttcttgcggcttga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (16)   
   KEGG ORTHOLOGY (1)   
   RefGene (12)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (12)   
   Pfam (12)   
All databases (38)   

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