KEGG   Juglans regia (English walnut): 109010589
Entry
109010589         CDS       T05245                                 
Name
(RefSeq) 5'-3' exoribonuclease 3-like
  KO
K12619  5'-3' exoribonuclease 2 [EC:3.1.13.-]
Organism
jre  Juglans regia (English walnut)
Pathway
jre03008  Ribosome biogenesis in eukaryotes
jre03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:jre00001]
 09120 Genetic Information Processing
  09122 Translation
   03008 Ribosome biogenesis in eukaryotes
    109010589
  09123 Folding, sorting and degradation
   03018 RNA degradation
    109010589
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:jre03021]
    109010589
   03019 Messenger RNA biogenesis [BR:jre03019]
    109010589
   03009 Ribosome biogenesis [BR:jre03009]
    109010589
   03016 Transfer RNA biogenesis [BR:jre03016]
    109010589
Transcription machinery [BR:jre03021]
 Eukaryotic type
  RNA polymerase II system
   Other transcription-related factors
    Transcription termination factor
     109010589
Messenger RNA biogenesis [BR:jre03019]
 Eukaryotic type
  mRNA degradation factors
   5'-3' decay
    5' exonucleases
     109010589
Ribosome biogenesis [BR:jre03009]
 Eukaryotic type
  Pre-60S particles
   RNases
    109010589
Transfer RNA biogenesis [BR:jre03016]
 Eukaryotic type
  tRNA degradation factors
   Rapid tRNA decay (RTD) pathway factors
    109010589
SSDB
Motif
Pfam: XRN_M XRN_N zf-CCHC DUF530
Other DBs
NCBI-GeneID: 109010589
NCBI-ProteinID: XP_035548936
UniProt: A0A6P9ENA8
Position
8:6901608..6921221
AA seq 1108 aa
MGVPAFYRWLAEKYPLVVVDVVEEEPVEIDGIKIPVDTSKPNPNNMEFDNLYLDMNGIIH
PCFHPEDRPSPTTYAEVFQCMFDYIDRLFVMVRPRKLLYMAIDGVAPRAKMNQQRSRRFR
AAKDAADAADEEARLREEFEREGRKLPPKQESQVFDSNVITPGTEFMAVLSIALQYYIHL
RLNNDPGWEKVKVILSDANVPGEGEHKIMSYIRLQRNLPGYDPNTRHCLYGLDADLIMLG
LATHEIHFSILREIVFTPGQQDKCFLCGQVGHLAANCEGKAKRKAGEFDEKGDGAAVAKK
PYQFLHIWTLREYLEHEMTIPNTSFKIDLECIVDDFIFMCFFVGNDFLPHMPTLEIREGA
INLLMAIYKKEIRALGGYLTNGSKPNLSRVEHFIQVVGSFEDKIFQKRARLHQRQAERIK
REKAHARRGDDAQPLVQPESLVPVARFHGSRLASGPSPSPYQQSESNYNSGSSMSARKDY
QLGQDTAGLSGLEIKSKQSWAADARGASAPPQKVARLSSGATIGAAIVEAENSLETEVSE
NKEELKVKLKEVLREKSDVFNSQKPEEDKIKLGEPGWKERYYEEKFSVRTPEELEAIRRD
VVLSYTEGLCWVMHYYYEGVCSWQWFYPYHYAPFASDLKDLGQLDISFELGSPFKPFNQL
LGVFPAASSHALPEHYRKLMTDPNSPIIDFYPTDFEVDMNGKRFAWQGIAKLPFIDEARL
LSEVQKIEHTLTEEEVWRNSVMFDMLFVKLCHPLSVCISILDEKYKRLTDKERVKVKEKL
KPEKSGGMNGYLSPCAGEPHPPIFRSPVIGMEDIIDNQVICAIFQLPDMHEHITRPPVGV
KFPEKIVNLGDLKPEPVLWHEDSGRRPWENGRQNSSGTTSGRQLGEAAHRFVANSLQVKV
NPNGYGNKMNAPPPSYPMPHHRPRMASYQNERYHDQAYNRMRPPGTFHSPRGHHQFSNST
AGPGYNEDGYNPPYVSPVDRHPNNRSHPQNYERNNQPVTHSNGQYSRNVNYHPSGSHQNG
GPMHARGQMAQAPNGVSAYPHQGGHNSYQNYQSPGGSSHQRWGVRPPMTNQGIPRGYGNP
QQLGNQYSVPERRANKRPSPPPPGYGHN
NT seq 3327 nt   +upstreamnt  +downstreamnt
atgggagttccagctttctatagatggttagcggagaagtacccgttggtggtggtggat
gtcgtcgaagaagaaccggttgaaatcgatggcattaagataccggttgatactagtaag
ccaaaccctaacaatatggaattcgacaatctctacctcgacatgaacggcattattcac
ccctgctttcatcccgaagataggccttctccaactacttatgctgaggtatttcagtgc
atgtttgattacattgataggctttttgtgatggtgcggcctcgaaaactgctatacatg
gctattgatggtgttgctccaagggctaaaatgaatcaacaacggtctaggcgttttaga
gcagccaaagatgcagcagatgcggcagatgaagaagcaaggctaagggaagagtttgag
agagaaggccgaaagcttcctccaaaacaggagtcacaagtttttgattctaatgttatt
actccaggaaccgaatttatggctgttctatcaattgcactgcagtactacattcatctc
aggttgaacaatgaccctggttgggaaaaagttaaggttattctttctgatgccaatgtt
cctggtgagggggaacacaagattatgtcatacattcgccttcaaagaaacctccctggt
tatgacccaaatacacgccattgcctgtatggtttggatgcggatttgataatgttgggt
ttagctacccatgaaattcatttttcaattcttcgagagattgtatttactcctgggcaa
caagacaaatgcttcctatgtggacaggtgggccatttagcagcaaattgtgaaggaaag
gcaaaaagaaaggctggagagtttgatgagaaaggtgatggtgctgctgttgccaaaaaa
ccataccagtttctccacatctggactctgagagaatacttggagcatgagatgacaatt
cctaacacttcattcaagattgatcttgaatgcattgtggacgattttatcttcatgtgt
ttctttgttggcaatgatttcttaccgcatatgcccacattggagattcgcgagggtgcg
attaacttgctgatggcaatatacaagaaagaaatcagggcattgggcgggtatttgact
aatggaagcaagccaaatttgagcagggtggagcattttattcaggttgttggatctttc
gaagataagatattccaaaaaagagctcgattgcatcagcggcaggctgaaagaataaag
cgtgaaaaggcacatgccaggagaggggatgatgcacagcctctagttcaacccgagtct
ttggtgccggttgctcgatttcatggttctcggcttgcttctggtccttcaccttctcca
tatcaacaatcagaatctaattacaattcagggagctcaatgtctgccagaaaagattac
caacttggacaagacacagcagggctgtcagggcttgaaattaaaagcaaacagtcttgg
gctgcagatgctagaggggcttctgctccgcctcaaaaagttgcacgcttgtcttcaggg
gctacaattggtgctgctattgttgaagctgaaaatagccttgaaacagaagtaagcgaa
aacaaagaagaattgaaagtgaagcttaaggaggtacttcgtgagaagtcagatgttttt
aactctcaaaaaccagaagaggacaagattaagttgggagaaccggggtggaaagaaaga
tactatgaggaaaagttttctgttagaactcctgaggagcttgaagcgattcgaagggat
gttgtcttgagttacacagaaggcctttgttgggtcatgcactattattatgaaggggtt
tgttcatggcagtggttttatccttatcattatgcaccttttgcttctgatctcaaggat
cttggtcagctggacataagctttgagcttggctctcccttcaaaccattcaatcagctt
ttgggagtatttcctgctgcaagttcccatgcacttcctgagcattacaggaaattgatg
accgatccaaattcacctattattgacttttacccgactgattttgaggtggatatgaat
ggcaaacggtttgcttggcagggtattgcgaaattgccttttattgatgaagctcgcctt
ctttcagaagtccagaaaattgaacatacattgacagaggaggaggtttggagaaatagc
gtgatgttcgacatgcttttcgtgaaattgtgtcatcctctctctgtatgcataagtatt
cttgatgagaagtataaacgattaacggacaaagaacgtgtcaaggtcaaggagaaactc
aagcccgaaaaaagtggtggaatgaatggctatttatccccatgcgctggagaaccccac
ccacctattttcaggtctcccgtgatagggatggaagatattattgacaaccaagtcata
tgcgctatattccaactcccagatatgcatgaacacatcactcgaccacctgtgggggtt
aaattcccagagaagattgtgaatttgggggatctaaaacctgaaccagttttgtggcat
gaagattctggaaggaggccatgggagaatggaaggcaaaactcctcgggaaccacttct
ggccgacagcttggggaggcagctcatcgatttgttgctaacagcttacaagtgaaggta
aatcctaatgggtatggcaataaaatgaatgccccaccaccatcttaccccatgcctcat
catcgcccgcggatggcttcctaccaaaatgaaagatatcatgatcaggcatataacaga
atgcgaccaccaggaacatttcactctcctcgaggacaccatcaattttcaaattccact
gccggtcctggttacaatgaggatgggtacaatccaccatatgtctcacccgtggaccgt
catcccaacaataggtctcaccctcagaactacgaaagaaataaccaaccagttacccac
agtaacggtcagtactccaggaatgtgaactatcatccatccggaagtcatcagaatgga
ggacccatgcatgctaggggacagatggcacaagctccaaacggggtcagtgcttatcct
caccaaggtggtcacaacagttatcagaactaccaatcacctggaggttctagtcatcag
cggtggggtgttcggcctccaatgaccaatcagggcattccgagggggtatggtaaccct
caacaactaggcaaccaatattctgtaccagaaagaagagcaaataagcggccatcccca
ccgccacctggatatgggcacaactag

  All links  
Ontology (5)   
   KEGG BRITE (5)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (31)   
   KEGG ORTHOLOGY (1)   
   RefGene (27)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (4)   
   Pfam (4)   
All databases (46)   

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