KEGG T02427: CKBE

Candidatus Kinetoplastibacterium blastocrithidii (ex Strigomonas culicis): CKBE_00372

Entry

CKBE_00372        CDS       T02427

Name

(GenBank) excinuclease ABC subunit B

K03702

excinuclease ABC subunit B

Organism

kbl Candidatus Kinetoplastibacterium blastocrithidii (ex Strigomonas culicis)

Pathway

kbl03420

Nucleotide excision repair

Brite

KEGG Orthology (KO) [BR:kbl00001]
09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    CKBE_00372
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:kbl03400]
    CKBE_00372
DNA repair and recombination proteins [BR:kbl03400]
Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     CKBE_00372
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     Supressor
      CKBE_00372

SSDB

Motif

Pfam:

UvrB_inter Helicase_C UvrB ResIII UVR DEAD Kinesin AAA_30 DUF87 Microtub_bd

Other DBs

NCBI-ProteinID:

AFZ83561

Position

413723..415738

AA seq 671 aa
MTNNRFVPFSNNSIFNLSKPYKPAGDQPEAIVKLINGISDGLHYQTLLGVTGSGKTYTMA
NIIASIGRPSLILAPNKTLAAQLYSEMRDFFPNNAVEYFVSYYDFYQPEAYIASKDIFIE
KDARINAHIEQMRLSATKSLIERRDTIIVSTVSCIYGIGDMSCYNSMAFSLRLGNLVSRD
NFFKNLIDMQYTRNDIEFSRSTFRVRGEYIDIFPAENFDLAVRVYLVDNEIKKLSLFDPV
IGKMLKDISRFALYPVSHYVVPREKILSAIDSIKEELREQLKFLVDNNKLLEAKRLEQRT
RFDLEMLQETGFCKGIENYTRHLSKLLPGSPPSTLIGYLPSDAIIFIDESHITLGQLSGM
YYGDRSRKETLVRHGFRLPSALDNRPLKFEEFENIVKQCIFVSATPSDYEREHSSNIVEQ
LVRPTGLVDPIVEVRPAKTQIDDILLQIKRTVILKERVFVTTLTKRMSENLTDFLKDNGI
KVRYLHSDIDTVERVEILRDLRIGSFDVLVGINLLREGLDIPEVSLVAIMDADKEGFLRS
ERSLIQTIGRAARNLNGHAILYADNITKSMKKAIEETRRRREKQLEFNSIHGIKAIGIKK
DIRELIDGVVVNNKSLKVDINKNIVKSHKKLSKEIKRLEKSMIDHANKLEFEKAAEVRDS
LNALKELLLFG

NT seq 2016 nt +upstreamnt +downstreamnt
atgacaaataatagatttgtacctttttctaacaatagtatattcaatctttctaagcca
tataagccagcaggtgatcagccagaggcaattgttaaattgataaatggcatatcagat
ggtttacattaccagacccttttgggggttactggttctggtaaaacttatactatggct
aatattatagcaagtattggcaggccatctctaatattagctcctaataaaacattagca
gcgcaattatattctgagatgagagacttttttcctaataatgcggttgaatattttgtt
tcttattacgatttttatcagccagaggcatatatagcatcaaaagatatctttatagag
aaagatgcgcgtattaatgcacatatagaacagatgcgcttatcagcaactaaaagttta
atagagagacgagatacgattatagtaagcacagtatcttgtatatatggtattggtgac
atgtcttgttataactcgatggctttttctttgcgtttaggcaacttggtctcaagagat
aatttttttaaaaacttaatagatatgcagtacactagaaatgatatagaattttctaga
tccacattccgtgttcgtggtgaatatatagatatttttccggctgagaactttgattta
gccgtaagagtttatcttgtcgataatgagataaaaaaattatcactatttgatccagtt
atcggcaaaatgcttaaggatatatctcgttttgctttgtatcccgtttctcactatgtt
gttccaagagaaaaaatattatctgctatagattctataaaagaagagttaagagagcaa
ttaaaattcttagtagataataataaattgctagaggcaaaacgtttagagcaaaggaca
agatttgatttagagatgttacaggagacaggtttttgtaagggtattgagaattataca
agacatttatctaaattattgccaggatctcctccgagcactttgataggttatttaccg
tcagacgctattatatttattgatgaaagtcatataacattagggcaattatcaggtatg
tattatggagacagatcgagaaaagaaacattggtgcggcatggttttcgtttgccatca
gccttagataatagacctttaaagtttgaagagtttgagaatatagtcaaacaatgtatt
tttgtttccgcaactccttctgattatgagagagaacattctagtaatattgtagagcaa
ctagttaggccaacagggttggtagatccgattgttgaagttagaccagctaagacgcag
attgacgatattttattgcaaataaaaagaacagttatattaaaagagcgagtgtttgtt
acaacattaacaaaacggatgtctgagaatttaactgatttcttaaaggataatggtata
aaagttagatatttgcattcagacatagatactgttgaaagagtggagatattaagagat
ttacgcattggatcttttgatgttttagtaggaataaatcttctgagagaaggattagat
atacctgaggtgtctttggtcgcaatcatggatgcagacaaagagggttttttaagatct
gagcgcagtttaattcagactataggtagggcagctaggaatttaaatggacatgcaata
ttgtatgctgacaatataactaaatcaatgaaaaaggctatagaagagactagaagaaga
agagaaaagcaattagagtttaactctatacatggcattaaagcaattggtattaagaag
gatataagggaacttatagatggagtagttgttaataacaaatcattaaaagttgatatt
aataagaatattgtaaaatcgcataaaaaattatcaaaggagattaaacgattagagaag
tctatgattgatcatgctaataagttggaatttgagaaagcagcagaagttcgtgattct
ttaaatgcattaaaagaacttcttttatttggctag

All links

Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (10)   
   Pfam (10)   
All databases (17)   

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