KEGG   Kocuria flava: AS188_08085
Entry
AS188_08085       CDS       T04206                                 
Name
(GenBank) aromatic ring-opening dioxygenase LigA
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
kfv  Kocuria flava
Pathway
kfv03030  DNA replication
kfv03410  Base excision repair
kfv03420  Nucleotide excision repair
kfv03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:kfv00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    AS188_08085
   03410 Base excision repair
    AS188_08085
   03420 Nucleotide excision repair
    AS188_08085
   03430 Mismatch repair
    AS188_08085
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:kfv03032]
    AS188_08085
   03400 DNA repair and recombination proteins [BR:kfv03400]
    AS188_08085
Enzymes [BR:kfv01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     AS188_08085
DNA replication proteins [BR:kfv03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     AS188_08085
DNA repair and recombination proteins [BR:kfv03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     AS188_08085
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     AS188_08085
   MMR (mismatch excision repair)
    DNA ligase
     AS188_08085
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      AS188_08085
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB HHH_2 DNA_ligase_ZBD BRCT HHH_5 PTCB-BRCT HHH zf-TFIIB
Other DBs
NCBI-ProteinID: ALU39719
UniProt: A0A0U3HXR7
Position
1816280..1818577
AA seq 765 aa
MSPQQTSTAQPVDASGQDLNPAEPDDALKEEYAELVDRVRAARTAYYVEDAPRISDAEYD
ALYRRLEELEALHPQIVANDSPTQEVGGEVSAAFAPVEHLARMYSLEDVFSTDELVAWMD
KTAAAVAELPGAPAPAWLTELKIDGLAVNLLYRGGELVRAATRGDGTTGEDVTHNVRTIG
SIPTVLQGEGIPEEVEVRGEVFISAKDFRALNEAIVAEGRAPFANPRNAAAGSLRQKDPE
VTARRRLSMYVHGVGAATGLEAATQSEVYGLLEGWGLPVSPYTKVLASTGEVLELIEEYG
RRRHDLIHEIDGIVVKIDDRRTQFRLGHTSRVPRWSVAYKYPPEEVNTTLLDILVNVGRT
GRVTPFGLMEPVRVAGSTVEMATLHNQDVVRAKGVLIGDTVVLRKAGDVIPEIVGPVVAL
RDGSEREFVMPTHCPSCGTELRPAKEGDVDIRCPNARSCPAQLRERVFHAAGRGAFDIEA
LGYEAALALTAPDEPATPPLTSEAQLFDLTPEDLREVRIRREKRRKGEPTGETELVPYFW
TKGTAKKPSEPTATTRKLFEELEKAKSQPLWRVLVALSVRHVGPTAARSLATAFGSMQAI
RDADEQTLAGVDGVGPTIAAAVTEWFAEPWRCEIVERWAAAGVRMEDEVDASLPRTLEGV
TVVVTGSLERYSRDSAKEAVLQRGGKASGSVSRRTDFLVAGENAGTKLDKAEQLGVPVLD
EAGFELLLARGPEAFAGDGDDDDTPPPPGAGQDAAAETTDDEDGK
NT seq 2298 nt   +upstreamnt  +downstreamnt
gtgagcccacagcagaccagcaccgcgcagcccgtcgacgcctccggccaggacctcaac
ccggccgagcccgacgacgcgctcaaggaggagtacgccgagctcgtcgaccgggtccgc
gccgcccgcacggcctactacgtcgaggacgccccgcggatctccgacgccgagtacgac
gccctgtaccgccggctcgaggagctcgaggccctgcacccgcagatcgtcgccaacgac
tcgcccacccaggaggtcggcggcgaggtctcggccgcgttcgccccggtcgagcacctg
gcccgcatgtactccctcgaggacgtcttctccaccgacgagctcgtggcctggatggac
aagaccgccgccgcggtcgccgagctgcccggcgcaccggcccccgcgtggctgaccgag
ctgaagatcgacggcctcgccgtgaacctgctctaccgcgggggcgagctcgtgcgtgcc
gcgacccgcggggacgggaccaccggcgaggacgtcacccacaacgtgcgcaccatcggc
tcgatccccaccgtgctccagggcgaggggatccccgaggaggtcgaggtccgcggcgag
gtcttcatctccgcgaaggacttccgcgccctcaacgaggccatcgtcgcggagggccgg
gcaccgttcgcgaacccgcgcaacgccgcggccgggtcgctgcggcagaaggacccggag
gtcacggcccggcgccggctgtcgatgtacgtccacggcgtgggcgccgccacgggcttg
gaggccgcgacccagtccgaggtctacggcctgctcgagggctggggcctgcccgtgagc
ccctacacgaaggtgctggcctccaccggggaggtgctcgagctcatcgaggagtacggc
cggcgccgccacgacctcatccacgagatcgacggcatcgtggtgaagatcgacgaccgc
cgcacccagttccgcctgggccacacctcccgcgtgccccgctggtcggtggcctacaag
tacccgccggaggaggtcaacacgacgctgctcgacatcctcgtcaacgtggggcgcacc
ggccgcgtcacccccttcgggctcatggagcccgtgcgcgtggccggctccaccgtggag
atggccaccctgcacaaccaggacgtggtgcgggccaagggcgtgctcatcggggacacg
gtcgtgctgcgcaaggccggggacgtcatccccgagatcgtcgggcccgtggtcgccctg
cgcgacggcagcgagcgggagttcgtgatgcccacgcactgcccctcctgcggcaccgag
ctgcgccccgccaaggagggggacgtcgacatccgctgccccaacgcccgcagctgcccg
gcccagctgcgcgagcgcgtcttccacgccgccgggcgcggggccttcgacatcgaggcc
ctcggctacgaggccgccctcgccctgaccgccccggacgagcccgcgacgcccccgctg
accagcgaggcccagctgttcgacctcaccccggaggacctgcgcgaggtgcggatccgc
cgggagaagcgccggaagggcgagcccacgggcgagaccgagctcgtgccctacttctgg
accaagggcaccgccaagaagccctccgagccgacggccaccacccgcaagctcttcgag
gagctcgagaaggccaagtcccagcccctgtggcgcgtgctcgtggccctgtccgtccgg
cacgtgggccccaccgccgcccgctccctggccaccgccttcgggtcgatgcaggccatc
cgcgacgccgacgagcagaccctcgccggggtggacggggtgggcccgaccatcgccgcc
gcggtgaccgagtggttcgccgagccctggcgctgcgagatcgtggagcgctgggccgcc
gccggggtccggatggaggacgaggtcgacgcgtccctcccgcgcaccctcgagggcgtc
acggtcgtggtgaccggctcgctcgagcgctacagccgcgactccgccaaggaggccgtg
ctgcagcgcggtgggaaggcctcgggatcggtctcgcgccggaccgacttcctggtggcc
ggggagaacgcgggcaccaagctggacaaggccgagcagctcggcgtgcccgtcctcgac
gaggccggcttcgagctgctcctcgcccgggggccggaggccttcgccggcgacggggac
gacgacgacaccccgccgccgcccggcgccgggcaggacgcggccgcggagacgacggac
gacgaggacgggaagtga

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (9)   
   Pfam (9)   
All databases (29)   

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