KEGG   Klebsiella oxytoca CAV1374: AB185_07880
Entry
AB185_07880       CDS       T04534                                 
Symbol
ligB
Name
(GenBank) NAD-dependent DNA ligase LigB
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
koc  Klebsiella oxytoca CAV1374
Pathway
koc03030  DNA replication
koc03410  Base excision repair
koc03420  Nucleotide excision repair
koc03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:koc00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    AB185_07880 (ligB)
   03410 Base excision repair
    AB185_07880 (ligB)
   03420 Nucleotide excision repair
    AB185_07880 (ligB)
   03430 Mismatch repair
    AB185_07880 (ligB)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:koc03032]
    AB185_07880 (ligB)
   03400 DNA repair and recombination proteins [BR:koc03400]
    AB185_07880 (ligB)
Enzymes [BR:koc01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     AB185_07880 (ligB)
DNA replication proteins [BR:koc03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     AB185_07880 (ligB)
DNA repair and recombination proteins [BR:koc03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     AB185_07880 (ligB)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     AB185_07880 (ligB)
   MMR (mismatch excision repair)
    DNA ligase
     AB185_07880 (ligB)
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      AB185_07880 (ligB)
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB HHH_5 HHH DUF3701 RNA_ligase
Other DBs
NCBI-ProteinID: AKL33818
Position
561161..562837
AA seq 558 aa
MQNGVWALVLWMLVGDGQAACPAWPQARADREIERLSQQITEWKNAYWQQGSSTVSDEVY
DQLAERLAYWRRCFTGEAPAHDASPPLKGEARHPVAHTGVRKLANQADVARWMRGQSGLW
VQPKVDGVAVTLVYRQGRLTQAISRGNGLAGEDWTARVLQIPSVPKVSDGVLANSVLQGE
LFLLREGHVQKQMGGMNARAKVAGMMMRQQAAADLNQLGLFIWAWPDGPQDMKQRLALLR
QGGFLYSALFSHPVADAQQVEQWRQRWFTSPLPFVSDGVVVRREKASPGRFWVPGQGDWV
IAWKYPPASRVMEVRRISFSVGRSGKIAVVAHLEPQMLDDKRVQRVSVGSVSRWYNLDIG
IGDQLQISLAGQGIPRIDSVVWRTAQRNKPQPPAARFNALTCYFATPECAEQFLSRLVWL
SSRSVLDIDGVGEALWRSLHDARSMEHLFSWLAFTPERLQAIPGVSTLRGQRLWHQFNLA
RERPFLRWIQAMGVPIPKTAFARLKEDDWRRMQERNEEQWRRLPGIGAERARQLVTFLHH
PDVAALAKWLSGQRVPGF
NT seq 1677 nt   +upstreamnt  +downstreamnt
atgcaaaatggagtctgggcgctggtgctgtggatgctggtgggagacgggcaggcagcc
tgccccgcatggccgcaggccagggccgatcgggagattgaacgtctcagccagcagata
acggaatggaaaaacgcctactggcagcaggggagcagtacggtaagcgatgaggtctat
gaccagcttgcggagcggctggcgtactggcggcgctgcttcaccggcgaggctcccgct
cacgacgcgtctcctcccctaaaaggggaggccagacatccggtggcgcacaccggcgtg
cgtaaactggcaaatcaagccgacgtggcgcgctggatgcgcggtcaatccggcctgtgg
gtgcagcctaaagttgatggcgtcgcggtcacgctcgtgtatcggcaggggcgtctgacc
caggcgataagccggggtaatggcctggccggggaagactggacggccagggtcttgcag
atcccctccgtgcctaaagtctctgacggcgtactggcgaatagcgttctacagggtgag
ctgttcctgctccgcgaggggcacgtgcaaaagcagatgggcggcatgaacgcgcgggca
aaagttgccggcatgatgatgcgccagcaggctgcggcggatcttaatcagctgggtctt
tttatctgggcatggcccgatgggccgcaggatatgaaacagcggctggcgctgctgcgg
cagggcggctttctttacagcgcgcttttttcgcaccctgtcgcggatgcgcagcaggtt
gaacagtggcgccagcgctggttcacttcaccgctgccttttgtcagcgatggcgtcgta
gtgcggcgggaaaaagcatctcccgggcgcttctgggttccgggtcagggcgattgggtc
atcgcctggaaatacccgcccgcctcgcgcgtcatggaggttcgccgtatcagctttagc
gtcgggcgcagcggtaaaatagccgtggtggcgcatctggaaccgcagatgctggacgat
aagcgcgtgcagcgggtgagcgtcggttcggtatcccgctggtacaatctggatatcggt
attggcgaccagctgcaaatcagccttgccgggcaggggataccgcgcatcgattcggtc
gtctggcgcacggctcagcgtaataaaccccagccaccggcggcgcgtttcaatgcttta
acctgctattttgccacgcccgagtgtgcggaacagtttctttcgcggctggtctggctc
tcatcccgatcggttcttgatattgacggcgtgggagaagcgctatggcggtccctgcat
gacgcgcgcagcatggagcatctcttttcatggctggcgtttacgccggagcggctgcaa
gccataccgggggtctcgacgctgcgcgggcagaggctgtggcaccagttcaatcttgcg
cgcgaacggccttttctgcgctggatccaggcgatgggagtccctataccgaagacggcg
tttgcccggctgaaggaggatgactggcgacggatgcaggagcgaaacgaagagcagtgg
cggcgcctgccggggatcggggcggaaagagcgcggcagctggtgacgttcttacatcac
ccggatgttgccgcactggcgaagtggctaagcgggcaacgcgttccgggattctga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (6)   
   Pfam (6)   
All databases (25)   

Download RDF
DBGET integrated database retrieval system