KEGG T03188: J415

Klebsiella michiganensis HKOPL1: J415_20295

Entry

J415_20295        CDS       T03188

Symbol

rne

Name

(GenBank) ribonuclease E

K08300

ribonuclease E [EC:3.1.26.12]

Organism

koy Klebsiella michiganensis HKOPL1

Pathway

koy03018

RNA degradation

Brite

KEGG Orthology (KO) [BR:koy00001]
09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    J415_20295 (rne)
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:koy03019]
    J415_20295 (rne)
   03009 Ribosome biogenesis [BR:koy03009]
    J415_20295 (rne)
Enzymes [BR:koy01000]
3. Hydrolases
  3.1  Acting on ester bonds
   3.1.26  Endoribonucleases producing 5'-phosphomonoesters
    3.1.26.12  ribonuclease E
     J415_20295 (rne)
Messenger RNA biogenesis [BR:koy03019]
Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     J415_20295 (rne)
Ribosome biogenesis [BR:koy03009]
Prokaryotic type
  rRNA processing factors
   J415_20295 (rne)

SSDB

Motif

Pfam:

RNase_E_G RNase_E_G_Thio PNPase_C S1

Other DBs

NCBI-ProteinID:

AHW89484

Position

4248727..4251981

AA seq 1084 aa
MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY
GAERHGFLPLKEIAREYFPANYNSHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI
SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPDGMGLIVRTAGVGKSAEAL
QWDLSFRLKHWEAIQKAADSRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELA
RQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALT
AIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVE
NRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLS
LSILRLIEEEALKENTKEVHAIVPVPIASYLLNEKRAAVSAIETRQADVRVIIVPNDQME
TPHYSVLRVRKGEETSTLSYLLPKLHEEEMAMPSDEEPAERKLPEQPALAAFVMPDAPPA
PAQEEPARAAATVAPAASAPKAAAPAQPGLVARFFSALKKVFSSEEETKPAEVQVEKKAE
EKSERQQERRKPRSNNRRDRNDRRDNRDNRDSRENRDSRAENSEGRESREENRRNRREKQ
QQNAEPREIRQTTVEDSEKGKARDEQQPRRERNRRRNDDKRQVQQEAKAQTREEPVVQES
EQEERVQTMPRRKPRQLAQKVRIESAAAEQVVEPVAAPQVAEAPVVQPEAAAPRTELAKV
DLPAVVETTAEHDENGEARESNGMPRRSRRSPRHLRVSGQRRRRYRDERYPTQSPMPLTV
ACASPEMASGKVWIRYPVVRPQDQQQEDVQVQEFSTTAAEPVVAPVAAAEPVVSEVIAPA
VAAESAVEPVATSEPVAVISEPEVPVVETTHPEAIAAPVDEQPQLIAEADEAVAEEVVAE
AVDVVAQEAVEPEAAVAEPVAVEETAVVVEEAPVVSEPVVEPAPEAEPVVATQPVVTAAP
VVKVANRHATAPMTRAPAPDYVPEAPRQSEWVRPNFDFDGKGSAGGHSATHKAAAGPTRP
QPVE

NT seq 3255 nt +upstreamnt +downstreamnt
atgaaaagaatgttaatcaacgcaactcagcaggaagagttgcgcgtcgcccttgttgat
gggcagcgcctgtacgacctggatatcgaaagccccgggcacgaacagaaaaaagcgaac
atctacaaaggcaaaatcactcgtattgaacctagcctcgaagccgcatttgttgattat
ggtgccgagcgtcatggtttcctccctctcaaagaaattgcccgcgaatacttccctgcc
aactacaattctcacggtcgtccaaacatcaaggacgtgctgcgtgaaggccaggaagtg
attgtccagatcgataaagaagagcgtggcaataaaggcgccgcgctgaccacctttatc
agcctggcgggtagctatctggtgctgatgccgaataacccacgcgctggcggtatttca
cgccgcatcgagggtgacgatcgcaccgaactcaaagaagcgctggccagccttgagctg
ccggacggcatgggacttatcgttcgcaccgctggcgtcggcaaatccgccgaagcgctg
cagtgggacttaagcttccgcctgaagcactgggaagccatccagaaagccgcagacagc
cgccctgctccgttcctgatccatcaggaaagcaacgtcatcgtgcgcgctttccgcgac
tatctgcgtcaggatatcggcgaaatccttatcgacaacccgaaggtgcttgagctggct
cgccagcacattgcggcgctgggtcgtccggatttcagcagcaaaatcaaactgtacacc
ggggaaatcccgctgttcagccactatcaaatcgaatcgcagattgagtccgctttccag
cgtgaagtgcgtctgccttccggcggttctatcgttatcgacagcaccgaagcgctgacc
gctatcgatatcaactccgcacgcgccacccgcggcggcgacatcgaagaaacggcgttt
aataccaaccttgaagcagccgatgaaatcgctcgtcagctgcgtctgcgcgaccttggc
ggcctgatcgttatcgacttcatcgatatgaccccggttcgccaccagcgtgcggtagaa
aaccgcctgcgcgaagccgtccgtcaggacagagcgcgcatccagatcagccatatttcc
cgctttggactgctggagatgtcgcgtcagcgcctgagcccgtcgctcggggagtccagc
catcacgtctgcccgcgctgtagcggaacgggtaccgtgcgcgataacgaatcgctgtcg
ctttctattctgcgtttgatcgaagaagaagcgctgaaagagaacaccaaagaagttcac
gctatcgtaccggtgccgattgcctcttacctgctgaacgaaaaacgtgccgcggtaagc
gcgattgaaacccgtcaggccgatgtgcgcgttattatcgtgccaaacgaccagatggaa
acgccgcactactctgttctgcgcgtgcgtaaaggcgaagagacctccacgctgagctat
ctgctgccgaaactgcacgaagaagagatggccatgccttctgatgaagagccggccgag
cgtaaactcccggaacaaccggcgctggctgcttttgtcatgcctgacgcgcctccggct
ccggcccaggaagagccggccagagccgcggctaccgttgcgcctgccgcatccgcaccg
aaggcggcagcgccggcgcagcctggcctggttgcccgcttcttcagcgcgctgaaaaaa
gtgttctccagcgaggaagagactaaaccggcggaagttcaggttgagaaaaaagcggaa
gagaaatccgagcgtcagcaggagcgtcgtaaaccgcgttccaacaaccgccgcgatcgc
aatgaccgccgcgacaaccgggataatcgcgatagccgcgagaaccgcgatagtcgtgcc
gagaacagcgaaggccgcgagtctcgtgaagaaaaccgccgcaaccgtcgtgagaagcag
cagcagaacgctgagccgcgcgaaatccgccagacaacggtcgaagatagcgaaaaaggc
aaagcgcgcgacgagcagcagccgcgccgcgaacgtaatcgccgtcgtaacgatgataaa
cgtcaggttcagcaggaagccaaagcgcaaacccgcgaagagccggttgttcaggagagc
gagcaggaagagcgcgtgcagacgatgccgcgtcgtaaacctcgccagctggcgcagaag
gtgcgtattgaatctgctgccgctgaacaggttgtcgagccggtagccgcgcctcaggtc
gccgaagcgccggtcgtccagccggaagccgcagcgccgcgcactgaactggcgaaagtc
gacctgccggcggttgttgaaaccactgcggaacatgatgagaacggtgaagcccgcgaa
tctaacggtatgccgcgtcgttcacgtcgttcccctcgtcacctgcgcgtcagcggccag
cgccgtcgtcgctaccgtgatgagcgttacccgacgcaatccccgatgccgctgaccgta
gcctgcgcatcgccggaaatggcgtctggtaaagtgtggatccgctacccggtcgttcgc
cctcaggaccagcagcaggaagacgtgcaggttcaggagttctcaaccactgcggctgag
cccgtcgtcgcgccagtggctgccgctgagccggttgtctctgaagtgattgccccggct
gtcgccgcagaaagcgcagtcgagccagtggccacttccgagcctgtggcggtgattagc
gaacctgaagttccggtcgtagaaaccacgcatccggaggctatcgccgccccggttgat
gaacagccgcagctgattgccgaagccgatgaagccgtggccgaagaagttgtcgcagaa
gccgttgacgtcgttgcgcaagaagctgtcgaaccggaagctgcggtcgctgaacctgtt
gcggttgaagagacggcggtggttgttgaggaagcgcctgttgtttccgaaccggtggtt
gaacctgcaccagaggcggagccggtcgttgcgactcaacctgttgtcacggctgcgccg
gtcgttaaggtcgccaatcgtcacgccacggcgccgatgacccgcgccccagcgccagac
tacgtacctgaagcgcctcgtcaaagcgagtgggttcgcccgaactttgattttgacggt
aaaggttctgctggcggtcatagcgccacgcacaaagccgctgccggacctacccgtccg
cagcccgtagagtaa

All links

Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (4)   
   Pfam (4)   
All databases (14)   

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