KEGG   Klebsiella pneumoniae CG43: D364_14050
Entry
D364_14050        CDS       T02866                                 
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
kpi  Klebsiella pneumoniae CG43
Pathway
kpi03030  DNA replication
kpi03410  Base excision repair
kpi03420  Nucleotide excision repair
kpi03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:kpi00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    D364_14050 (ligA)
   03410 Base excision repair
    D364_14050 (ligA)
   03420 Nucleotide excision repair
    D364_14050 (ligA)
   03430 Mismatch repair
    D364_14050 (ligA)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:kpi03032]
    D364_14050 (ligA)
   03400 DNA repair and recombination proteins [BR:kpi03400]
    D364_14050 (ligA)
Enzymes [BR:kpi01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     D364_14050 (ligA)
DNA replication proteins [BR:kpi03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     D364_14050 (ligA)
DNA repair and recombination proteins [BR:kpi03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     D364_14050 (ligA)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     D364_14050 (ligA)
   MMR (mismatch excision repair)
    DNA ligase
     D364_14050 (ligA)
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      D364_14050 (ligA)
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB HHH_2 HHH_5 BRCT DNA_ligase_ZBD PTCB-BRCT HHH DZR_2 Prok-E2_C RNA_ligase DUF1799
Other DBs
NCBI-ProteinID: AGX38847
Position
complement(2937271..2939286)
AA seq 671 aa
MEPIEQQLTELRTTLRHHEYLYHVMDAPEVPDAEYDRLMRKLRELESQHPELITPDSPTQ
RVGAAPLTAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSTDHLTYCCELKLDGLA
VSILYENGVLVQAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVFLPQAG
FEKINEEARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGELPASHS
ARLLQFKAWGLPVSDRVTLCHTPEEVLTYYRKVEEERPHLGFDIDGVVIKVDSLALQEQL
GFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSNATLHN
ADEIERLGLKIGDKVVIRRAGDVIPQVVNVVLSERPADARDVVFPTHCPVCQSDVERVEG
EAVARCTGGLICGAQRKESLKHFVSRRALDVDGMGDKIIDQLVEKEYVHTPADLFRLTAG
KLTGLDRMGPKSAQNVVNALEKAKETTFARFLYALGIREVGEATAAGLAAHFGTLEALEQ
ASIEELQKVPDVGIVVATHTFNFFAEESNRDVIAQLLAEGVRWPAPVVVKAEEIDSPFAG
KTVVLTGSLSQLSRDDAKARLVALGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVI
DEAEMMRLLGE
NT seq 2016 nt   +upstreamnt  +downstreamnt
atggaaccaatcgaacaacaactgactgaactgcgaaccacgcttcgccatcatgaatat
ctgtaccacgttatggacgcgccggaagtgccggatgcggaatatgaccgcctgatgcgc
aagctgcgcgagctggagagccagcatccggagctgattaccccggattcgccaacacag
agggtgggggcggcgccactcaccgcctttagccagatccgccatgaagtgccgatgctg
tcgctggataacgtgtttgacgaagagagctttctcgccttcaacaagcgggtacaggat
cgcctgaaaagcacagatcatcttacctactgctgcgagcttaagctcgacggcctcgcg
gtgagcattctctacgaaaacggcgtgttggtgcaggcggcaacccgcggcgacggcacc
accggcgaagatattacctctaacgtgcgaactattcgcgccatccccctcaagctgcat
ggcgagaatattcctgcacgccttgaggtacgtggggaagtgttcctcccgcaggccggg
tttgaaaaaatcaatgaggaagctcgccgcaccggcgggaaagtgtttgctaacccgcgt
aatgcggcagcgggttcgctgcgccagctcgatccgcgcatcacggcgaagcgaccgctt
actttcttctgctacggcgtgggcgtgctggagggcggcgagctgccggccagccactcg
gctcggttgctgcagttcaaagcatgggggctgccggtgagcgatcgcgtcaccctgtgc
catacccccgaggaagtgcttacttactatcgtaaagtcgaggaagagcgtccccacctg
ggctttgacattgatggcgtggtgatcaaagtcgattcgctggcgctgcaggaacagctg
ggtttcgtcgcccgcgcgccgcgctgggccgtggcctttaagttcccggcacaggagcag
atgaccttcgtccgggacgtggagttccaggtgggccgcaccggggcgattacgccggtg
gcgcgtctggagccggtccatgttgccggcgtgttggtgagcaatgccaccctgcataat
gccgatgaaattgaacgcttaggcttgaaaatcggcgacaaggtggtgattcgccgggca
ggcgatgtgatcccgcaggtggttaacgtggtgctttccgagcgtccggcggatgcccgg
gatgtcgtcttcccgacccactgtcctgtatgtcagtcagacgttgaacgggtggaaggc
gaggcggtagcccgctgtacgggcggcctgatctgcggcgcgcagcgcaaagagtcgctc
aagcacttcgtctcccgtcgcgcgctcgacgttgacggcatgggcgacaagatcatcgac
cagctggtggagaaagagtacgtccataccccggcggatctgttccggctgactgcgggg
aaactgaccgggctggatcggatggggccgaagtccgcgcaaaacgtagtcaacgccctc
gagaaagccaaagagacgaccttcgcacgcttcctctacgccttaggtattcgcgaggta
ggagaagcgacggcggcgggcctggcggcgcatttcggcactctcgaagccctggagcag
gcttccattgaggagctacagaaagtccctgatgtcggcatcgtcgtcgctacccatacc
ttcaacttctttgccgaagagagcaaccgcgatgtcattgcgcaactgctggcggagggg
gttcgctggccagcgccggtggtggtgaaggcggaagagattgatagcccgtttgcaggc
aaaaccgtggtcctgaccggcagcctcagccagctgtcgcgcgatgacgccaaagcgcgt
ctggtggcgctgggggcgaaggtggcaggcagcgtgtcgaagaaaaccgacctggtgatt
gccggcgaagcggcgggttctaagctggcgaaagcgcaggagctgggcatcgaggtgatt
gacgaagccgaaatgatgcgtctgctgggagaataa

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (12)   
   Pfam (12)   
All databases (31)   

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