KEGG   Kosakonia sacchari: C813_18310
Entry
C813_18310        CDS       T03601                                 
Name
(GenBank) DEAD/DEAH family ATP-dependent RNA helicase
  KO
K05592  ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
Organism
ksa  Kosakonia sacchari
Pathway
ksa03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:ksa00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    C813_18310
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ksa03019]
    C813_18310
   03009 Ribosome biogenesis [BR:ksa03009]
    C813_18310
Enzymes [BR:ksa01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     C813_18310
Messenger RNA biogenesis [BR:ksa03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     C813_18310
Ribosome biogenesis [BR:ksa03009]
 Prokaryotic type
  rRNA helicases
   C813_18310
SSDB
Motif
Pfam: DEAD Helicase_C DbpA ResIII DeaD_C CMS1 AAA_22 DRTGG
Other DBs
NCBI-ProteinID: AHJ76444
Position
554163..556067
AA seq 634 aa
MAEFETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAF
SLPLLNNIDPDLRAPQILVLAPTRELAVQVAEAMTDFSKHMRGVSVVALYGGQRYDVQLR
ALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEG
HQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTAYGMRKNEALVRFL
EAEDFDAAIIFVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDGRLDILI
ATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNI
ERTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLAKIQPSAEEEMDI
ETLAAALLKMAQGERPLILPPDAPMRPRREFRERDDRFERRGDRNDRGPRGERSERGGED
RPRRERRDVGEMELYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFGTHSTIELP
KGMPGEVLQHFTRTRILNKPMNMQLLGDAQPRERSERRGGGERRGGFGGERREGGRGEGR
RFSGERQEGRSFGGERRAPRRDRDDSAPRRRNDA
NT seq 1905 nt   +upstreamnt  +downstreamnt
atggctgaattcgaaaccacttttgcagatctgggcctgaaggctcccatccttgaagct
cttaacgatctcggttacgaaaaaccatctccgatccaggctgagtgcattccgcacctg
cttaacggtcgtgacgtgctgggcatggcccagactggtagcggtaaaaccgcagcgttt
tctctgccgctgctgaacaacatcgatccggacctgcgtgcgccgcagatccttgtgctc
gctccgacccgcgaactggcggttcaggttgctgaagcaatgaccgatttctctaaacat
atgcgcggcgtaagcgtggtagccctgtacggtggccagcgttatgacgtgcaattacgc
gctctgcgccaggggccacagattgtcgtcggtacaccgggccgtctgctggatcacctg
aaacgcggcacgctggatctctctaaactgagcggtctggtgctggatgaagccgacgaa
atgctgcgcatgggctttatcgaagacgtagaaaccatcatggcgcagatcccggaaggt
catcagaccgcgctgttctctgcaaccatgccggaagcaatccgtcgcattactcgccgc
tttatgaaagagccgcaggaagtgcgcattcaatccagcgtgacgactcgtccggatatc
agccagagctactggactgcatacggcatgcgtaaaaacgaagcactggttcgcttcctg
gaagcagaagattttgatgcggcgatcatcttcgttcgtaccaaaaacgcaacgctggaa
gtggctgaagcgctggagcgcagtggctataacagcgccgcgctgaacggtgatatgaac
caggcactacgtgagcagacactggagcgtctgaaagacggtcgtctggatatcctgatc
gcaactgatgttgcggcacgtggtctggacgttgagcgtatcagcctggttgttaactac
gacatcccgatggattccgaatcctacgttcaccgtatcggtcgtaccggtcgtgcgggt
cgtgcgggtcgtgcgctgctgttcgttgagaaccgcgagcgtcgtctgctgcgcaacatc
gaacgtacgatgaaactgaccattccggaagtggaactgccgaacgcagagctgctgggt
aaacgccgtctggaaaaattcgccgcgaaagttcagcagcagctggaaagcagcgatctg
gatcagtaccgtgcgctgctggcaaaaatccagccttctgctgaagaagagatggatatt
gaaacgctggccgctgcactgctgaaaatggcacaaggcgaacgtccgctgatcctgccg
ccggatgcaccgatgcgcccgcgtcgcgaattccgtgaacgtgatgatcgcttcgaacgc
cgtggcgatcgtaacgatcgtggcccgcgtggcgaacgttctgaacgtggtggtgaagat
cgtccgcgtcgtgaacgtcgtgatgttggcgaaatggaactgtatcgtattgaagtgggc
cgcgatgatggtgttgaagtacgccatatcgttggtgctatcgccaatgaaggtgatatc
agcagccgttacattggtaacatcaagctgttcggtactcactctaccattgagctgccg
aaaggcatgccgggcgaagttctgcagcacttcactcgcacgcgtattctgaacaagccg
atgaatatgcaactgctgggcgatgcacagccgcgtgagcgtagcgaacgtcgcggtggc
ggtgagcgtcgtggcggtttcggtggtgaacgccgtgaaggtggtcgtggtgaaggtcgt
cgtttcagcggcgagcgtcaggaaggtcgtagtttcggtggcgaacgccgcgcaccgcgc
cgcgatcgtgacgacagcgctccgcgtcgccgtaacgacgcataa

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (5)   
   KEGG ORTHOLOGY (1)   
   RefGene (2)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (8)   
   Pfam (8)   
All databases (19)   

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