KEGG   Ligilactobacillus agilis: BEN83_06415
Entry
BEN83_06415       CDS       T05198                                 
Name
(GenBank) Holliday junction DNA helicase RuvB
  KO
K03551  holliday junction DNA helicase RuvB [EC:5.6.2.4]
Organism
lagl  Ligilactobacillus agilis
Pathway
lagl03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:lagl00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03440 Homologous recombination
    BEN83_06415
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:lagl03400]
    BEN83_06415
Enzymes [BR:lagl01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     BEN83_06415
DNA repair and recombination proteins [BR:lagl03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    RecBC pathway proteins
     BEN83_06415
    RecFOR pathway proteins
     BEN83_06415
SSDB
Motif
Pfam: RuvB_N AAA_lid_4 RuvB_C AAA AAA_5 TIP49 Mg_chelatase AAA_16 AAA_3 AAA_22 Sigma54_activ_2 nSTAND3 RNA_helicase Sigma54_activat NB-ARC AAA_14 TsaE AAA_18 Bac_DnaA AAA_24 AAA_17 AAA_28 IstB_IS21 Rad17 AAA_33 NTPase_1 AAA_25 DUF815 NACHT Parvo_NS1 AAA_19
Other DBs
NCBI-ProteinID: ASR41126
UniProt: A0A231PXM3
Position
complement(1239057..1240064)
AA seq 335 aa
MEHDERLISSDELAADFTDDLTLRPKFLDQYIGQSRLKQEIAVYIQAAKSRQESLDHVLL
YGPPGLGKTTLATIIANEMGVNIKTTTGPAIERPGDLVALLNDLDVGDVLFIDEIHRLPK
NVEEILYSAMEDYFIDIIVGQDATAHPVHFPLPPFTLIGATTKAGMLSAPLRARFGIVGH
MNYYSEAELSQIVLRSAEVFTTNINEDGAHEIARRSRGTPRIANRLLKRVRDFAQVAAKA
EIDKEIVDYALNLLRVDSKGLDETDRKLLTTMIKLYHGGPVGLNTIAANIGEETDTIADM
VEPYLLQIGFLKRTPRGRVVTKAAYDHLGLEMTND
NT seq 1008 nt   +upstreamnt  +downstreamnt
atggaacacgacgaacgcttaattagcagcgatgagttagcggctgatttcacagacgac
ttaaccttgcggcccaaatttttagaccaatacatcgggcaaagtcggctcaaacaagaa
atagccgtctacattcaagcagccaagagtcgccaggaatcactggaccacgtcttattg
tatggcccgccgggcttaggaaaaaccaccttagccaccattattgctaacgaaatgggg
gttaacatcaagactaccaccgggccagcgattgaacggccaggtgatctagtcgccttg
ctaaatgatttagacgtgggcgacgtcttgtttattgacgaaatccaccgcctacctaaa
aacgtcgaggaaatcctttattcggcgatggaagattactttatcgatattatcgtgggc
caggatgccactgcgcacccggtacattttcccttgccgccctttaccctaatcggggcg
acgactaaggccgggatgctttctgcgccactgcgggctcgctttgggattgtcggccac
atgaattactatagtgaagccgaattaagccagattgtccttaggtcggcggaggtgttc
acgactaatataaatgaagacggggcccatgagattgcccgccggtcacgagggacgccg
cggattgccaaccgcctcttaaaacgggtgcgcgactttgcccaggtggcggctaaggcg
gaaatcgataaggaaattgttgattacgccctcaacctcctgcgggttgatagtaaaggc
ctagacgaaaccgaccgcaagctactgacaaccatgattaagctctatcacggtggcccg
gttggtttgaatacgattgcggctaacatcggggaagaaacggatacgattgccgatatg
gtagaaccctacctcttacagattggctttttaaagcggactccgagaggccgggtggta
accaaggcggcctatgaccacttaggccttgaaatgactaatgattaa

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (31)   
   Pfam (31)   
All databases (41)   

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