KEGG   Laccaria bicolor: LACBIDRAFT_297011
Entry
LACBIDRAFT_297011 CDS       T01044                                 
Name
(RefSeq) hypothetical protein
  KO
K12609  CCR4-NOT transcriptional complex subunit CAF120
Organism
lbc  Laccaria bicolor
Pathway
lbc03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:lbc00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    LACBIDRAFT_297011
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:lbc03019]
    LACBIDRAFT_297011
Messenger RNA biogenesis [BR:lbc03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Ccr4-NOT complex
     LACBIDRAFT_297011
SSDB
Motif
Pfam: PH PH_9
Other DBs
NCBI-GeneID: 6076557
NCBI-ProteinID: XP_001880859
JGI: 297011
UniProt: B0D9S6
AA seq 1715 aa
MTTQAPFLPSTSTPQWEPRRSSPSTGFVTPPRFQQLQAQAAQSLAQQPAQNHLQFPSSNH
PSPANNFSTDSSSDMPPHTRSPSFFSPFRRQSNESQPNINQRATSTNGGTNLNAPTSQQQ
NAPSTPMQQVQPPPQTNLYGQQQQTPQQQIPPNSQPAMGQQQGAMGRTTTDVQPPPTAPS
PSKTQPPAPLHPEIRSVVQLTIAHAQKIYFSGPLVRRIERQADGQRPTKDEGWVDVWAQL
GGTTLSVWDMKEIQEASKQGREVPPTYVNVMDAFVQVLGSVTVPATATSGPKRYTNVLTL
NTAGSNLLLFSCPSTNALISWAAALRLSAWEKSRLEEIYTAHLIRITLSARDTPTTLVRG
RMEGWARIRIAGQTDWKRVWMVVSASVDGAEGSASPPVSNPTLKKKRMSNLFSRDQSQPQ
PTGPTKASMSMYLSPKPKDRKRALLTVTDITQVFSVYPERPELISRSTLIKVEGLLGDEE
IAAGMRSREGWLLVMPELDPSGGQAAEMLKWIVAMHDAFSLYGRPKGWTWDPRDRTSLMF
AYPVGPQKESLFLERELVESLDPRDDRTSVIRSRLIDLLVEHMHPAVQAVPQRPAAQQSS
ADTPPSLPPIGGAGGNGFGISSVGGTPPMSTTPTNSGTSLQPQPGTVPTGPQLPPLNFNG
TPPAQERLNVASIPVDTSVTRALLAGTSNPPNAAKPSENGPSSAQSNGPTQPPDNGLSSQ
PPSNVSPVQLLNNGPSAQSLNNGPQQHQSNQPSSQTQNNGAPAVPEKPASPQSPTFDQPM
SNSPQSMNSALSLPSPKTGLPPLSGTTLASTSSGRPSMQSSNSLDKPGLPSLPQGYNKPL
EKMSIGSVASVSNIAPTTPLSPNRLGQTNPFAAPQPRMATSPSAIPPRFIAEQTRAKTQD
SFGSDSISAYSSDSRLETQPNAAPQRESPEASWQQPSSPPENDFTTEAGALYYMQQADSA
SSSKIQATKSAEEDDDYSSSDHGSGTPAGRSSINNQQPPARRNTPMSFANEPSASNPAGT
FGTDRVSSARSVLGRKPSGARAPPAMRMYAGDSVSSSLRVNEEESEHEENMDTRNEAPSN
MQRSGSFEDPNAEVLAVLSYLDVDDAPSASTSLQKVEPLKVRDRTGTSPPPVSAPPQATS
TDSGPPFKSSFAPSKQAAERKAKVQAQQAAHQAAKHKPGRNGKRKSKYAGAWNESTDEEE
EEEEEEDDADSDGEPVMTRGQSTPSSSSAPSIKPPQNQGGHGDYGQPEAPQTYSHLRPPR
TLPQIPGGRPPPDDYHHHQPQPRRAGTDPYIESGRRTYYEENPQIRSQAEYPQPGAARQS
MWSQVLEPSGRQQVNQNEPRDTFVQLEPSETMTKAFTPQGLLSAGIQDKQDRSAKRQEEL
ARETGASLINVPNKPPPPQTGLLGAITAHERERKREGGVGAALTEREREKRVAEERQRRF
DEQQRQALDQMAQGGSMYGGQFGYNPMMANPMMMGMNPMMGMNPMMTGGMNPMAPMMTGA
GGLNPMMTGGGGLNPMMTGGGGLNPMMTGGAMGQMNPMMTGQMGFPGMMPGFNPQHMFAA
QQAAQAYQQAMMAFSVAGSQVGGDGGAEGQQQMLNPNMTGGGMSMAGFDPRMSMMGMQMM
GAPQMGAPMMGAPQMGNPAPLGMQMTGMSGFDARFSPGQTNQAPNLNESNLLPPNQNQGQ
LSSRTSSPAGRGSPLVRGDGQFDTVRPARPATPKH
NT seq 5148 nt   +upstreamnt  +downstreamnt
atgactacgcaggcgccttttcttccttcgacgtcaactcctcagtgggagccgcgcagg
agcagccccagcactggctttgtgaccccgcctagattccaacaattgcaagctcaggct
gcccaatcactcgctcagcagccagcccaaaatcaccttcaatttccctcatctaatcac
ccttctcccgccaacaacttttccaccgactcatcctcggacatgccacctcacacacgt
tccccatctttcttctcgccatttcgccggcagtcgaacgagtcccagccgaacatcaat
caacgtgcaacctcaactaatggcggaacgaacctaaatgccccaacttcgcagcagcaa
aacgcgccaagcaccccgatgcagcaagtacagcctcctccgcaaaccaatttgtatggg
cagcagcaacaaacgccacagcagcaaataccaccgaattcgcaacctgcgatgggccaa
caacaaggtgctatggggcgaacaactactgatgttcaacctccaccgaccgccccttca
ccatcaaaaacacaacctccagcccccttacatcctgaaatacgctcagttgttcaactt
accatcgcccacgcacagaagatatatttctctgggcctctcgttcggcggatagaacgc
caggctgatggacagcggcccacaaaggacgaaggttgggttgacgtctgggcgcagttg
ggtggcacgacgctcagtgtttgggacatgaaagagatacaggaagcgagcaagcaggga
agggaggtccctcctacgtatgtgaatgtaatggatgcttttgttcaagtcctaggttca
gtgaccgtcccggccactgctacctctggccccaagcgatacacgaacgtattaactctc
aatactgctgggtcaaatctccttctcttctcatgtccttctacaaatgctctcatttca
tgggctgccgcactccgattgtccgcttgggaaaagtcgcgcttagaagagatatacacg
gctcatctaataagaatcacgctcagtgctcgtgatacaccaacaacgctcgtgcggggc
cgcatggagggttgggcgcggatacgcattgcgggacaaactgactggaaacgagtctgg
atggtggtcagtgcctcggtggacggcgctgagggatcagcctcaccacctgtttccaac
ccaacattgaagaagaagagaatgtcaaatctgttctcgcgtgatcagagccagcctcaa
ccaactggccctaccaaagcatcgatgtcgatgtacttgtctcccaaacctaaggacagg
aagagagcgctcctcacagtcactgatatcacacaagtgttttctgtgtatcctgaacga
cccgaattgatcagccggagtacactgatcaaggtggaaggtctcttaggagacgaggaa
atcgctgcagggatgaggtcgcgagagggttggctattggttatgccagagttggatcca
agtggtggtcaagcagctgaaatgctcaagtggatcgtggctatgcacgatgctttcagc
ctgtatggacgaccaaagggatggacttgggatccacgagatcggacctctttgatgttt
gcgtatcccgttggtccacagaaagaatccttattcctggagcgcgaattggtggaatcc
ttggatccaagagacgatcgcacatctgttataagatcccgcctgattgatctgctggtt
gaacatatgcaccctgctgtccaagctgtcccacaacgcccggcggcgcagcaaagctcc
gctgacacccctccatcccttcctcccattggtggtgctggtggaaatggttttggtata
tcaagcgtgggtgggacacccccgatgtctaccacaccgacaaattccgggacgtccctt
caaccacaaccagggactgttccaacaggcccccaacttccgccactaaactttaatgga
acgccccctgcgcaagaacgtctgaatgtggcatcaattccagtggacaccagtgttact
cgcgcgttattggcgggcacctcaaacccacccaatgcagcgaaaccatctgagaatgga
ccatcttctgcgcagagtaatgggcctacccagcctccagacaacgggctctcctcacaa
cctcccagtaacgtatcacccgtgcaacttctaaataatggaccatccgcgcaatcccta
aacaacggaccccaacaacaccagagcaaccaaccttccagtcagacgcaaaacaacgga
gctcctgcggtgccggagaaaccagcaagtccccaatcacccaccttcgaccagccgatg
tcgaatagtcctcagtcaatgaactctgcgctatctttgccttcacctaaaaccgggctt
cctccgctttccggaaccacactcgccagtacgagcagtggtcgaccaagcatgcaatct
tcgaatagcctagacaaaccagggctaccatcgctgcctcagggttataataaacctctg
gaaaaaatgtcaataggcagtgtggccagtgtttccaacattgccccgacgacgccactc
tctcccaaccggctggggcagacaaatcccttcgcggcgccacaaccacggatggcgact
agccccagcgctatccctcctcgttttatcgcagaacagacccgtgccaagactcaagat
agtttcggaagcgatagtatttctgcatattcgtctgattccaggttggagacgcagccc
aacgctgcacctcagcgtgaaagcccagaagcatcatggcagcagccttcatcaccaccc
gaaaacgactttactactgaggctggtgccctttactacatgcagcaagccgatagcgca
tcaagtagcaaaattcaggccacgaaatcagcagaggaagatgacgactattcgtcttcg
gaccatggatccggtaccccggccggcaggagttctattaataaccaacaaccgccggcc
cggcggaacactccgatgtcttttgccaacgagccctctgccagcaatccagctggcaca
tttggcaccgatcgagttagctcagcgcggtcagttcttggacgtaaaccatcaggtgca
cgtgctccaccagccatgcgtatgtacgccggtgattccgtttcttcctctctgcgcgtc
aacgaagaagagtcagaacacgaagaaaacatggatacacgcaatgaagctccctccaac
atgcaacgttcagggtctttcgaggacccaaatgcagaggtccttgctgtgctctcctac
cttgacgtcgacgacgctccgtcagcctccacatccctccaaaaagtcgaacctctcaaa
gttcgtgaccggactggaacgtcgcctccacctgtttcagccccaccccaagcgacatcg
acggactcagggccaccctttaagtcatcgttcgccccttcaaaacaagctgctgaaagg
aaggccaaagtacaagctcaacaggctgctcaccaagctgctaaacataaaccggggagg
aacgggaagcgaaaatcgaaatacgcaggggcatggaatgagagtacggatgaggaggag
gaggaggaagaagaggaggatgacgcagattcggatggggaaccggttatgacgcgagga
caaagtacaccctcttcttcttctgcaccctccatcaagccccctcaaaaccaaggcggt
cacggtgactatggtcaacctgaagcaccgcagacgtattcgcatctgagacctccaaga
acactgccacagatacctggcggtcggcctcctcctgatgactaccatcatcaccaacct
caacctcgacgtgcaggaactgatccatatatagagtctgggcggcgcacatactatgag
gagaatccacaaattaggtcccaagcggaataccctcaaccgggcgctgctcgtcagtca
atgtggagtcaggtattggaaccttccggacgtcagcaggtgaatcaaaatgaaccgcgc
gacactttcgtgcagctcgagccctctgaaactatgacaaaagcattcacgcctcagggc
ttgctctctgctggtatccaggacaaacaagataggtcggcgaaaagacaagaggaactc
gctcgcgagactggtgcttccctcattaacgttcccaacaaaccacctccacctcaaact
gggttacttggcgcaatcactgctcacgaacgcgaacgtaaacgtgaaggaggcgtgggt
gccgcactcacggaacgtgagcgagaaaaacgagtagcggaggagcggcagaggcgattt
gatgaacaacagcgccaggctttggatcaaatggcacagggcggatcgatgtacggaggt
caatttggttacaatcccatgatggcgaatccgatgatgatgggaatgaacccgatgatg
ggcatgaatccaatgatgacgggtgggatgaaccccatggcacccatgatgacgggagcg
ggtgggttaaatcctatgatgacgggcgggggtgggttaaatcctatgatgacgggcggg
ggtgggttaaatcctatgatgacaggtggagcgatgggccagatgaatccgatgatgact
ggtcaaatgggattccctgggatgatgcctgggttcaaccctcaacacatgtttgcggca
caacaggcggcgcaggcataccagcaagctatgatggctttctctgttgctggctctcaa
gttggtggagatggcggtgcagaaggccaacaacaaatgctcaaccccaatatgacgggt
ggtgggatgagcatggctgggtttgaccctcgaatgtcgatgatgggtatgcagatgatg
ggtgccccgcaaatgggcgcgccgatgatgggtgctccgcaaatgggtaaccccgcgccg
ctggggatgcaaatgacaggtatgtctggcttcgacgcgcggttctcgccaggtcagacc
aaccaagctccaaatctgaacgaatccaaccttcttccgcctaatcaaaatcaaggccaa
ctgtcttctcgcacgagttcaccagctggtcggggatcaccactggttcgaggtgatggg
caatttgacactgtccgccctgcacgccctgctaccccaaaacactag

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (74)   
   KEGG ORTHOLOGY (1)   
   RefGene (69)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   JGI (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (2)   
   Pfam (2)   
All databases (83)   

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