KEGG   Lacticaseibacillus paracasei ATCC 334: LSEI_1578
Entry
LSEI_1578         CDS       T00407                                 
Name
(GenBank) DNA polymerase III catalytic subunit, PolC type
  KO
K03763  DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7]
Organism
lca  Lacticaseibacillus paracasei ATCC 334
Pathway
lca03030  DNA replication
lca03430  Mismatch repair
lca03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:lca00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    LSEI_1578
   03430 Mismatch repair
    LSEI_1578
   03440 Homologous recombination
    LSEI_1578
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:lca03032]
    LSEI_1578
   03400 DNA repair and recombination proteins [BR:lca03400]
    LSEI_1578
Enzymes [BR:lca01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     LSEI_1578
DNA replication proteins [BR:lca03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    DNA polymerase III holoenzyme
     LSEI_1578
DNA repair and recombination proteins [BR:lca03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    DNA polymerase III holoenzyme
     LSEI_1578
SSDB
Motif
Pfam: DNA_pol3_alpha RNase_T PHP DNA_pol3_finger DNA_pol3_a_NII HHH_6 tRNA_anti-codon DNA_pol3_a_NI HHH_3 DEDDh_C RNase_H_2 Zn-ribbon_8 T2SSK YhfH DUF655
Other DBs
NCBI-ProteinID: ABJ70352
UniProt: Q038M0
Position
complement(1572674..1577008)
AA seq 1444 aa
MALSQHEMFEKLLDQLDLAADVRQDPSLTSGTVQNVTIHEQSRRYDFTLGFDAILPFQTF
NAIATKLPLVFQQIAATDLSVVVTQPTITDELLAQYWQYVVTHAEIGTGIVRELCEKQVP
TLENDRAVIKTENEQIRQYLIQQGLGKLEETYRQVGFSGLRMQAEVDEEQAAQSMAAFQA
QRAEETAKMAKAAAEVVKQQAAKQKQVQTDGPVQMGRQMKMTDAPQQMVTITQEERSVTV
EGYVFDVEVRELRSKRQLLIFKVTDYSSSFIAKKFSNGPEDEAMFARIQKGQWLRVRGSV
QEDNYSRELTINAQDIQTVSHPDPTDDAEGEKRVELHLHTNMSQMDAMNPISDYVKRAKE
WGHKAIAVTDHAGLQAYPEAHSAAVKAGLKMLYGVEINLVDDGTPVAYRADEPRDLASAE
YVVFDVETTGLSAVYDKVIELAAVKMKDGKVIDQFEEMIDPGFPLSELTINLTHITDDMV
HGSKSEVDVFKLFQQFCDGAIMVGHNVTFDVGFLDNGYERHGLADIDNPVIDTLELSRML
HPERKNHKLDTLAKQYKVSLEHHHRANADAEATGYLLYALEKEAAKMYGMTTLNQLNDRV
GAGDAYKAARPSHAIVFAKTQAGLKNLFKLVSLSNVKYFYRVPRVPRSQLQKLREGLLVG
SACSNGEVFTAMMQKGEAEARAKASFYDYLEVQPLPVYQPLIEAGLIKGEAHLKDIIQKI
IKIGSELEKPVVATGDAHYLDQHDAIYRQILIHSQGGANPLNRHSLPDVHFRSTSEMLTD
FSWLGEEKAHELVVDNSNLIANWVDDDITPVKDKLYTPEVPGVEENLKHDVMTTAHELYG
DPLPDIVAQRLDKELKSIIGNGFSVIYNIAQRLVLKSNKDGYLVGSRGSVGSSLAATMAG
ITEVNPLPPHYRCPNCQYSEFFTHGEIGSGFDLPDKQCPKCGADLHKDGHDIPFETFLGF
HGDKVPDIDLNFSGDYQPIAHNYIKVMFGEDHSFRAGTIGTVADKTAYGYVKAYERDTGQ
QLRGAEIDRLAQGDTGVKRTTGQHPAGILIVPADMDIYDFTPIQYPADDQNAAWMTTHFD
FHSIHDNILKMDVLGHDDPTMIRMLQDLSGVEPKSIPTDDPGVMALFSGTKSLGVTPEQI
NSKMGTLGIPEFGTRFVRGMLEETKPTTFSELLQISGLSHGTDVWLGNAEELIKQGIVTL
KEVIGCRDNIMMDLIHWGMEDSMAFNIMEHVRKGRGIPDDWQKAMRENENVPDWYIESCL
KIKYMFPKAHATAYILMALRIAWFKVHYPLIYYTAYFSVRAEDFDLAAMSHGKEAVKAAM
KEITDKGMDASTKEKQLLTVLEIANECLERGFKIKMIDVTKSDSHNFLIQDDHTILAPFR
AVPGLGDNVAKQIVAAREEKPFLSKEDLANRGKVSKTLIDYMTTNHVLDDLPDENQLSLF
DGLF
NT seq 4335 nt   +upstreamnt  +downstreamnt
ttggctttatcccaacatgagatgtttgaaaaattattggatcaactcgacttggcggca
gatgtccgacaagatccttcgttgaccagcggcacggtacaaaacgtgaccattcatgaa
caatctcggcgttatgatttcactttggggtttgacgcgatcctgccatttcagactttc
aatgcaattgcgaccaagttgccgttagtgtttcaacagattgctgcgactgatttatcg
gtggtggtaacccagccaaccattactgacgagttattagctcaatattggcagtacgtc
gtgacccatgccgaaattgggacaggaattgttcgcgagttatgtgaaaaacaagtgcca
acacttgagaatgatcgtgctgtgatcaaaaccgaaaatgagcaaattcggcaatacttg
attcagcaagggctcggtaagctcgaagaaacttatcgtcaggttggcttctctggctta
cggatgcaagccgaagttgatgaggaacaagcagcccaatcgatggcggcttttcaggct
caaagagctgaagaaaccgctaaaatggccaaggctgctgcagaagtagtgaagcagcaa
gcggctaaacaaaaacaagttcaaactgacggcccagttcaaatggggcggcagatgaaa
atgaccgatgccccgcaacaaatggtgaccatcacgcaagaggaacgttcagtgacggtt
gaaggctatgtttttgatgttgaggttcgggaactgcgatctaagcggcagttactaatt
ttcaaagtgactgactatagctccagcttcattgcaaaaaaattcagcaatggtccagaa
gatgaagccatgtttgcgcgcattcaaaaaggtcagtggctacgcgtgcgaggcagtgtt
caagaggacaactattcccgtgagctgacgattaatgcacaggatattcaaactgtctcc
catccggacccaaccgatgatgctgaaggtgagaaacgtgttgaattacatctgcacacc
aatatgagtcaaatggacgctatgaatccaattagcgactatgtgaagcgggctaaagag
tgggggcataaggcgattgctgtcactgaccatgcaggtttgcaggcttatccagaggcg
cattcagccgctgtcaaagccggtttaaaaatgctttatggcgtcgagataaacttagtt
gatgatggcacgccggttgcttaccgagcagatgagccgcgtgatttagccagcgctgaa
tatgtggtttttgacgttgaaaccactggcttatctgcggtttacgacaaagtgattgaa
ttggctgccgtcaaaatgaaagacggcaaagtgattgatcaattcgaagaaatgatcgat
ccgggtttcccactttctgaactgacaattaatttgacacatatcactgatgacatggtg
catggatcgaagtctgaagtcgatgttttcaaattgtttcagcagttttgcgacggtgcc
attatggtgggtcataatgtgactttcgatgttggctttttggataatggttacgagcgg
catggattggcagatattgacaatccggtcatcgataccttggaattgtcgcggatgctg
catccagaacggaagaatcacaaactcgataccttggcgaagcagtacaaagtcagccta
gaacatcatcatcgcgctaatgccgatgccgaggcaactggttatctgctttatgctttg
gaaaaagaagcggccaagatgtatggcatgacgaccctcaatcagttgaatgatcgggtt
ggggcgggggatgcctataaagctgcccggccaagtcacgcgattgtttttgcgaaaaca
caagcgggattgaaaaaccttttcaaattagtatcgttgtctaatgttaagtacttctat
cgggtgccacgggtgccacgcagtcagctgcaaaaactgcgtgaaggcttgttagtcggt
tcggcttgttccaacggcgaagttttcacagcaatgatgcaaaaaggcgaagcggaggcc
cgcgccaaagcgtcattttatgattatctagaagtgcaaccattacctgtctatcaacct
ttgatcgaggctggtttgatcaaaggcgaggcacatctaaaagatattattcaaaaaatc
atcaaaatcggatcggaactggaaaaaccagtcgtagcgacaggcgacgcccattatttg
gatcaacatgacgcgatttatcgacagattctgattcatagtcaaggcggagccaatccg
ctcaatcgccacagtttgccagatgtgcattttcgttcgacaagtgagatgctgaccgat
tttagttggcttggggaagagaaggcccacgagctggtagttgataattctaacttgatt
gccaactgggttgacgatgatattacgccggtgaaggataagctttacacacctgaagta
cctggggtggaagaaaatctgaaacatgacgtgatgaccacggcgcatgaattgtatggc
gatcctttgccagacattgtggcgcagcgactcgataaagaactaaaaagtatcatcggt
aacgggttctctgttatttacaacatcgcgcaacggctggttttgaagtccaataaagac
ggatacttggttggctctcgaggatcagttgggtccagtttagccgcaacgatggccggc
attactgaggttaatcctctgccgccgcattatcgttgtcctaactgtcaatacagcgaa
ttcttcactcatggcgaaatcgggtccggttttgatttgccagataaacaatgccctaaa
tgcggcgctgatttgcataaagatggccacgatattccgtttgaaactttcttaggcttc
cacggtgataaagtgccggatattgatctgaatttttcgggtgactatcagccaattgca
cataactatatcaaagtcatgttcggtgaggatcatagtttccgtgctgggaccattggc
acggttgcagacaaaacggcgtatggttatgttaaagcatatgaacgtgacacgggacag
caactgcgcggtgccgagattgatcggctggcgcaaggtgacacgggggttaaacgtacc
accgggcaacacccggcaggtattttgatcgtgcccgctgacatggatatttatgatttc
acaccgattcagtacccagctgatgatcaaaatgctgcctggatgaccacgcactttgat
ttccattccatccatgacaatattttgaaaatggacgtgctggggcatgatgacccgacg
atgatccggatgctgcaagatttgtccggggttgagccaaaatcaattccaacggacgat
cctggcgtcatggcgcttttttccggcaccaagagtctgggtgtcacgccggaacagatt
aactcgaaaatggggacgttaggcattccagaatttgggacgcgttttgttcgcggaatg
cttgaggaaaccaagccaacaaccttcagcgaactgttacagatttccggtttgtctcac
gggaccgatgtttggttaggtaacgctgaagaactgattaagcaaggcattgtcacgctt
aaagaagtcattggttgtcgtgacaacattatgatggacttgattcactggggcatggaa
gattcaatggcctttaacatcatggaacatgtgcgtaaaggtcgcggtattccagatgat
tggcaaaaggcaatgcgtgaaaacgagaacgtgcctgattggtatatcgagtcctgctta
aagatcaagtacatgtttccgaaagcacatgcgaccgcctatatcttaatggcgctacga
attgcttggttcaaggtccattacccgttgatctattacacggcatatttctcggttcga
gctgaagactttgatcttgccgccatgagtcatggcaaggaagcagtcaaagcggccatg
aaggagattaccgataagggcatggatgcctctaccaaggaaaagcagttgctgacggtt
ttggaaatcgccaatgaatgtctcgaacgcggctttaagattaaaatgattgatgtcacg
aagtcggattcgcacaatttcttgattcaggatgatcacacgattctggcaccattccgt
gctgttccgggcctgggcgataacgttgccaagcaaatcgtggccgctcgtgaagaaaaa
ccattcctgtccaaggaagatctggctaatcgtggtaaggtttcgaaaacgttgattgat
tatatgacaacaaaccatgtcttggatgacttgccagacgaaaaccaattatcgctattt
gacggtttattctag

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (3)   
   KEGG PATHWAY (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   SWISS-PROT (1)   
Protein domain (15)   
   Pfam (15)   
All databases (29)   

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