KEGG   Lates calcarifer (barramundi perch): 108872558
Entry
108872558         CDS       T04895                                 
Symbol
nxf1a
Name
(RefSeq) nuclear RNA export factor 1 isoform X1
  KO
K14284  nuclear RNA export factor
Organism
lcf  Lates calcarifer (barramundi perch)
Pathway
lcf03008  Ribosome biogenesis in eukaryotes
lcf03013  Nucleocytoplasmic transport
lcf03015  mRNA surveillance pathway
lcf05168  Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:lcf00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    108872558 (nxf1a)
   03015 mRNA surveillance pathway
    108872558 (nxf1a)
   03008 Ribosome biogenesis in eukaryotes
    108872558 (nxf1a)
 09160 Human Diseases
  09172 Infectious disease: viral
   05168 Herpes simplex virus 1 infection
    108872558 (nxf1a)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:lcf03019]
    108872558 (nxf1a)
   03009 Ribosome biogenesis [BR:lcf03009]
    108872558 (nxf1a)
Messenger RNA biogenesis [BR:lcf03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Nuclear pore complex
     108872558 (nxf1a)
   mRNA cycle factors
    Stress granule specific factors
     108872558 (nxf1a)
Ribosome biogenesis [BR:lcf03009]
 Eukaryotic type
  Pre-60S particles
   Export and cytoplasmic maturation factors
    108872558 (nxf1a)
SSDB
Motif
Pfam: Tap-RNA_bind TAP_C NTF2 LRR_4 LRR_8 LRR_9
Other DBs
NCBI-GeneID: 108872558
NCBI-ProteinID: XP_018515830
UniProt: A0A4W6F075
Position
LG8:14792054..14804476
AA seq 708 aa
MLLFVLGERGKLGGMNRLTDTTGEISRQQVKFDGAFRMNQGTLFRRSYPNLAVVTRVLNA
DRGDFMVKREVRNTDFTVVGEHDDRTAPQFRSRKGRGSHKGRSYDRSRRDRQRGGHPGGF
GGPGPRSRLEDTDGDVTMSDSSQDNSSQHRFNPYGRPFRKGDGRFDRDRRQGKVGGGRGG
GGGGGFRGDRGGGSSSGGGGRNQSGWSKVTIPHGRKYDKKWLLTALQNICSVPFTPVQYH
VDHDRAHFYVDDLSAATALRKCSHKITDTDGYKVEVHANSSAPPSFLLSDLKPEHLEHLK
QCMAKRFDGSQQALDLNNIRTDPDLVSQKIEVTLNRKTHMEAVIRIIEENIPELTCLNLS
NNRIHKLDELAELVTKVPNLKTLNLSHNELKSDRELDKVKGLKLAELWLNKNPLCLYFKD
QASYISAVRQRFPRLLKLDGYDLPAPIGFDVETPTTIPPCKGSCFCSDEIKALILRFLQQ
YYSIYDSGDRQPLLDAYHDGASLSLTTPYSSQNPSRSSLGEYHKDSRNLKRIKDSTMRFR
LLKHTRLNVVAFLNELPKTQHDIASFTVDVNTYTNTLLSFTVSGVFKEVAVDGKSRDSTM
AFSRVFITVPAGGSGLCIVNDQLFIRMATTEEIRRAFVAPAPTPSSSPVPVLTAQQQEML
TAFSQKSGMNLEWSQKCLQDNEWDFNRAAEVFTQLKTEGQIPDVAFIK
NT seq 2127 nt   +upstreamnt  +downstreamnt
atgttgttgttcgtgctgggggaaagaggaaaactaggcgggatgaaccgcctgactgac
acaaccggagagatcagcagacagcaggttaagtttgacggggctttccggatgaaccag
gggactttattccgaagaagttatcccaacctggctgtggtgacacgtgtgctgaacgcc
gaccgtggagactttatggtgaagagagaggtcaggaacactgatttcacggtcgtagga
gagcatgatgatagaactgcaccacagtttcgcagccgcaaaggccgaggttcccacaag
ggtcggtcatatgacaggtcccgcagggaccgccagaggggaggccacccaggtggcttt
ggaggtcctggaccacggtctaggcttgaagatactgatggagatgtgactatgagtgac
agctctcaagacaacagctctcagcacagattcaacccatatggaagaccttttcggaaa
ggagatggacggtttgaccgagacaggcgacaaggcaaagtgggaggtggtagaggagga
ggaggcggcggtggcttcagaggagaccgaggtggaggaagcagcagtggaggaggaggg
agaaatcagtcggggtggtccaaagtaacgataccacacggaagaaaatatgacaagaaa
tggttattgacagctcttcagaatatctgttcagttcccttcacacctgtacagtaccat
gttgaccatgacagggcacatttctacgtggatgatctatccgctgccactgctttacgc
aaatgttctcacaagatcacagacacagatggttataaggtggaggtacatgccaactcc
agcgctccaccctccttcctcctctctgacctgaagcctgagcacttggagcacctgaag
caatgcatggcaaagcgtttcgatggctcccagcaagcactcgacttaaacaacatccga
acagacccagaccttgtgtcccaaaaaattgaagtaaccttgaatcgaaagacacacatg
gaagctgtcatcagaatcattgaagaaaacattccagagcttacgtgcttgaatctaagc
aacaaccgtattcacaaactggatgaacttgctgaattggttaccaaggtgcctaatctg
aagaccctcaatctttcccacaatgagctgaagtcagaccgagagctggacaaggtgaaa
ggcctgaagctggcagagctgtggctgaacaagaaccctctgtgtctctacttcaaggat
caggcctcatacatcagtgctgtgcggcaaaggtttccccggcttctcaaactggatggt
tatgacctccccgcgccaattggatttgatgtggaaacacccaccactatccccccctgc
aagggcagctgtttttgctcagatgaaatcaaggctctcatccttcgcttcttacaacaa
tactacagtatatacgactcaggggacagacagcctcttctggatgcttatcatgatggc
gcatcgttatccctcacaacaccttactcctcccagaacccatccaggagcagtcttgga
gagtatcacaaagacagtcgaaacctgaagaggatcaaagactccacaatgagatttcga
ctgctgaagcacacgcgactgaacgtggtggctttcctcaacgagctgcccaaaactcaa
cacgacatcgcctcctttactgtcgacgttaacacctatacaaacacactactgtcattc
acagtgagcggagtcttcaaagaagttgctgttgatggtaaatcccgagactccaccatg
gccttctctcgagttttcatcacagtcccagcagggggttcaggtttgtgtatcgtgaac
gaccagctttttatcagaatggctacaacggaggagatccgccgcgccttcgtggctcct
gccccgaccccatcttccagccccgtccctgtcctcactgcccagcagcaggagatgctt
acagccttctcacaaaagtctggcatgaacctggaatggtcccaaaagtgtctgcaagac
aacgagtgggatttcaacagagcagcagaagtcttcacacagttaaagactgaaggccag
atccctgatgttgcattcataaaatga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (4)   
   KEGG PATHWAY (4)   
Genome (1)   
   KEGG GENOME (1)   
Gene (19)   
   KEGG ORTHOLOGY (1)   
   RefGene (15)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (5)   
   UniProt (1)   
   RefSeq(pep) (4)   
DNA sequence (8)   
   RefSeq(nuc) (4)   
   GenBank (2)   
   EMBL (2)   
Protein domain (6)   
   Pfam (6)   
All databases (46)   

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