KEGG   Lates calcarifer (barramundi perch): 108876992
Entry
108876992         CDS       T04895                                 
Symbol
cylda
Name
(RefSeq) ubiquitin carboxyl-terminal hydrolase CYLD isoform X1
  KO
K08601  ubiquitin carboxyl-terminal hydrolase CYLD [EC:3.4.19.12]
Organism
lcf  Lates calcarifer (barramundi perch)
Pathway
lcf04217  Necroptosis
lcf04622  RIG-I-like receptor signaling pathway
lcf04625  C-type lectin receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:lcf00001]
 09140 Cellular Processes
  09143 Cell growth and death
   04217 Necroptosis
    108876992 (cylda)
 09150 Organismal Systems
  09151 Immune system
   04622 RIG-I-like receptor signaling pathway
    108876992 (cylda)
   04625 C-type lectin receptor signaling pathway
    108876992 (cylda)
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01002 Peptidases and inhibitors [BR:lcf01002]
    108876992 (cylda)
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:lcf04121]
    108876992 (cylda)
Enzymes [BR:lcf01000]
 3. Hydrolases
  3.4  Acting on peptide bonds (peptidases)
   3.4.19  Omega peptidases
    3.4.19.12  ubiquitinyl hydrolase 1
     108876992 (cylda)
Peptidases and inhibitors [BR:lcf01002]
 Cysteine peptidases
  Family C67
   108876992 (cylda)
Ubiquitin system [BR:lcf04121]
 Deubiquitinating enzyme (DUB)
  Ubiquitin-specific proteases (UBPs)
   UBP/USP
    108876992 (cylda)
SSDB
Motif
Pfam: CYLD_phos_site CAP_GLY UCH
Other DBs
NCBI-GeneID: 108876992
NCBI-ProteinID: XP_018522392
Position
LG2:21364420..21385907
AA seq 956 aa
MSSVLWSQEKPSGGFREDWRFYMVVKECTVEKPPQKTLRIPRGSLGQACQERNSLGRTLP
PCKGKKSLRILDQTNVVLSLDERDVQELDEKLAELLFPITNCEERYALLCNKSRLTRVCD
IDCGSKVRVQLRSGDEPLPGVVRFKGSLLPDRALSGIWFGVELLEEGRGQGFTEGSYQGR
QLFRCEDECGVFVALDKLELCEDDDDEALGELEVDHVNLVEEDQDFPPLEINSRVLVQTR
DGPERGTIIFCDLLPGNESLGYYVGVDMDNPIGDWDGVIDGKLLCNFASLEHTRLVPICD
VMPEYSMQDQRLQKHSFAPRGTNSDKSSSGQSKPKSKGLGHQCGSRSKSEFYYTLNGSSV
DPPAQSKSKSTWYIDEVGEDPAKSLTDTPPDFNQSSPPSRAPPAASLSSDNKFHSLPFSL
NRRTGPIDSMSHGPLSLSVQSVMGEQPEPSSPAAPPSPRPPTPPRGQPGLEVGSLVEVKE
NPPLCGVIRWVGLPPGLLEPLAGLELEEECPGCTDGTFKGTRYFTCPPKKALFVKLKCCR
PDSRFPSLHHSSNPIERCNSIAFGGYLSEVVHENTPPRTENDGLDVMVGKKKGIQGHYNS
CYLDSTLFCLFSFSSVLDTVLLRPRSKTDVEYYRETQELLRTEIVNPLRIHGYVCATKVM
KLRRILEKVEAASGFTSEEKDPEEFLNILFHHILRVDPLLKLRSAGQKVQDCYFYQIFMD
KKDKVGVPTIQQLLEWSFINSDLKFAEAPSCLIIQMPRFGKDFKMFNKIFPSLELDITDL
LEDTPRECRICGGLALYECRDCYEDGDITAGKIKQFCEKCNTQVHLHPRRKAHRHGKLSV
PKELQEGTGRQGSFPRQRMELFAVLCIETSHYVAFVKYGSADSAWLFFDSMADRDGGQNG
FNIPQVSPCPEVEAYLKMTPEELHALDPKSIQGQARRLLCDAYMCMYQSPTMSLYK
NT seq 2871 nt   +upstreamnt  +downstreamnt
atgagctctgtcctgtggagccaggagaagcccagtgggggcttccgggaggactggcgc
ttctacatggtcgtgaaggagtgtacggtggagaagcctccccagaagaccctgaggatc
ccccgtggcagtcttggccaggcctgtcaggaacgcaacagcttggggcgaacactgccc
ccgtgcaaaggcaagaaaagtctccgcattctggaccagaccaatgtggtgctgagcctg
gacgagcgggatgtccaggagctggacgagaagctggctgagctgctgttccccatcacc
aactgtgaggagagatatgccctgctctgcaacaagtcacggctaacacgcgtctgcgat
attgactgtggttccaaggtgcgagttcagttgcgctcaggggatgaacctctgcctggt
gtggtccgcttcaagggctcgctgctccctgacagggccctctctggaatctggtttgga
gtggagcttctggaggagggccggggccaaggcttcacagagggttcctaccagggccgt
caacttttccgctgtgaggatgaatgcggtgtgttcgtggccttggacaaacttgaactc
tgtgaggatgatgatgatgaagccttgggcgagctggaggtggaccatgtcaatctagtg
gaggaggaccaggacttccctccactggagatcaactccagggttctggtgcagaccagg
gatggacctgagagaggcaccatcattttttgtgacctgctgccagggaatgagagcctg
ggctactatgtgggagttgacatggacaatcctattggggactgggatggtgtgattgac
gggaagctgctgtgtaattttgccagtttggagcacactcgacttgtccccatctgtgac
gtaatgccagaatattccatgcaggaccaaaggctgcaaaagcacagttttgcccccaga
ggcaccaacagtgacaagtcgtcctctggccaaagcaaaccaaagagcaaaggattaggt
catcagtgtggcagtagaagcaagtctgaattttactatactttaaatggcagctctgtt
gatcccccagcccagtccaaatccaaaagcacatggtacattgatgaagttggggaggac
cctgccaagtcacttactgacacgccccctgacttcaaccaatcctccccaccatccaga
gccccgcccgctgcctcgttgtccagtgacaacaagttccactctttgcccttcagcctg
aaccggaggacggggcccattgacagcatgagtcatgggcctctctccctgtccgtccag
tcggtgatgggagagcagcctgagccctcgtcgcctgctgcacctccctcgccgcgacct
ccgacacctccccgtgggcagccaggcctggaggtgggctctctggtggaggtgaaggag
aacccccctctgtgcggtgtcatccgctgggtgggcctgcctcctggcctgctggagcct
ctggctgggctagagctggaagaagagtgtcctggttgcactgatggtaccttcaaaggc
acacggtatttcacctgcccacctaaaaaagccctgtttgtgaagctcaagtgctgccgg
cccgactcccgcttcccatccctgcaccactcctccaatcccatagagaggtgcaactcc
attgcattcgggggttacctgagtgaggtggtacatgaaaacacgccaccacgcacagaa
aacgatggtctagatgtcatggtgggaaaaaagaaaggcatccagggccactacaactct
tgctacctggattcaactctcttctgtctcttctccttcagttctgtactggacactgtt
ctgctgagaccacgatcaaagactgacgtagagtattacagagagacccaagaactgtta
cgcacagagatagtcaaccccctgcgcatacatgggtatgtatgtgcaactaaagtgatg
aagctcaggaggatcttggagaaagtagaagcagcctctgggtttacctctgaagaaaaa
gatcctgaagagttcctcaatatccttttccatcacatacttagagtggatccactgctc
aagctgaggtcagcaggacagaaggtccaggactgttacttttaccagatcttcatggac
aagaaggacaaagttggagttcccaccatccaacagctcttggagtggtccttcatcaac
agtgacttaaagtttgcagaggctccatcctgccttatcatccagatgccccgttttggc
aaggactttaaaatgttcaacaagattttcccctcactagagttagacatcacagacctc
cttgaagacactccaagggagtgtcgaatctgcggaggcctggctctctatgagtgtcga
gactgttatgaggacggggacatcaccgctggcaagattaaacagttttgtgaaaagtgc
aatacacaggttcacctccacccgaggaggaaagcccatcggcacggcaaactgtctgtc
cccaaggagctacaggaaggcacggggcggcagggcagttttccccgtcagaggatggag
ctgttcgccgtgctgtgcatcgaaaccagtcactacgtggccttcgtcaagtatggaagc
gcagattccgcctggctcttcttcgacagcatggcggaccgcgatggagggcagaatggt
ttcaacatcccccaggtgtctccctgtccggaggtggaggcctacctgaaaatgacccca
gaggagttgcatgctctggatcctaagagcatccagggccaggcccgacgcctgctgtgt
gacgcctacatgtgcatgtaccagagcccaaccatgagcctgtacaagtag

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (3)   
   KEGG PATHWAY (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (11)   
   KEGG ORTHOLOGY (1)   
   RefGene (7)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (3)   
   RefSeq(pep) (3)   
DNA sequence (5)   
   RefSeq(nuc) (3)   
   GenBank (1)   
   EMBL (1)   
Protein domain (3)   
   Pfam (3)   
All databases (31)   

Download RDF
DBGET integrated database retrieval system