KEGG   Lates calcarifer (barramundi perch): 108884872
Entry
108884872         CDS       T04895                                 
Name
(RefSeq) laminin subunit gamma-1
  KO
K05635  laminin, gamma 1
Organism
lcf  Lates calcarifer (barramundi perch)
Pathway
lcf04510  Focal adhesion
lcf04512  ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:lcf00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    108884872
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04510 Focal adhesion
    108884872
SSDB
Motif
Pfam: Laminin_N Laminin_EGF Laminin_B Alanine_zipper Sec63 Death
Other DBs
NCBI-GeneID: 108884872
NCBI-ProteinID: XP_018534496
Position
LG4:856017..893803
AA seq 1594 aa
MRSLIRALVAWSWVAVCARAAMDECSDEQGRPQRCMPEFVNAAFNVTVVATNTCGSPPEE
YCVQTGATGVTKSCHICDARDPRNHHSAVYLTDYNNQQDTTWWQSQTMLAGIQYPNSINL
TLHLGKAFDITYVRLKFHTSRPESFAIYKRTSEGGPWVPYQYYSGSCEKTYQKPSRGFIR
TGEDEQQALCTDDFSDISPLTGGNVAFSTLEGRPSAYNFDYSPVLQDWVTATDIRVTLNR
LNTFGDEVFNDPKVLKSYYYAISDFAVGGRCKCNGHASECVKNSGGRLVCNCKHNTEGDD
CNVCKPFYNDRPWRRATADNANECLPCDCNGKSSECYFDAELYRATGHGGHCRNCADNTD
GPNCERCLDNYYRDQSGSRCLPCGCNTVGSESPQCDSRGMCACKPGVTGEKCDRCQPGYH
SLTEAGCRPCSCSPSGSTQECDVNTGQCRCKDHVEGFSCDRCKLGYFNLDPSNPQGCTPC
FCFQHSSVCDSADGFSVHTISSSFYRDDEQWSGQQRDGSSVPVQWSPSGQEISLVSDDYF
PMYFVAPEKFLGNQMLSFGQNLSLSFRVDRRDTRLSAEDLVLEGANLRVAVPLIAQGNAY
PNENMQTYVFRLHDSADYPWRPPISQSDFQKLLHNLTAIKIRGTYSERSAGYLDDVSLVT
ARRGPGVPARWVEQCTCPQGYQGQHCEQCTLGYRRARPELRAFSPCEPCNCNGHSDACNP
DTGACDCQHNTAGLSCERCKDGFYGDATQGTSGDCKPCPCPAGATCAVVPKTREVVCTNC
PAGTTGKRCELCDDGFFGDPLGQNGPVRACRACKCSDNIDPNAVGNCNRETGECLKCIYN
TNGFFCDRCKEGFYGNALAANPADKCKPCACSPFGTVDQQTSCSQVTGQCPCLPNVAERD
CSACEPGFFNLQSRKGCERCNCNPIGSTNGQCDITTGQCECQPGVTGLHCERCEVNFFGF
SSSGCKPCDCDPEGSQSGQCKEDGRCECRPGFVGARCDMCEENYFYNRSVPGCQQCPSCY
SLVRDKVNQQRQKLHDLQTLIDNLGSGQDTVSDKAFEDRLKEAERAIMELLEEAQTSKDV
DRGLLDRLNSINNTLTTQWNRLQNIRNTVDDTGAQADRARNRVRDAENLIDRARQELDKA
KDAVSKVDIKPPGGTGEPNNMTLLAEEARRLADKHKMDADQIEKIAKDANDTSTKAYNLL
LKTLDGESRTSQEIDELNKKYNEAKELAKNLEKQANKVQAEAEDAGNKALKIFANLTSLP
PFDTKALEDEANKIKKEASDLDKLIDKTEKEYNDLRDDLKTKEQEVRKLLEKGKSEQQTA
DQLLARADAAKALAEEAAKKGQSTFREAEGILNDLRDFDKRVNDNKTAAEEAMKKIPAIN
ATIIGANEKTKQAEAALGNAASDAREAKKKAEEAEKIASNVQKGSAKTKEDAEKAFQDTN
KLDNEVNDMMDQLSAAEQELAKKKAEADQDMMMAGMASSNAKEAEDNARKAKSAVKMVLS
TITTLLDQLGNIDKVDLSKLNQIDESLKRAKGKMADSDLDRKLAELNDVARTQEEMIGDY
DRQIREIHADITNLNDIKNTLPDGCFNTPSLERP
NT seq 4785 nt   +upstreamnt  +downstreamnt
atgcgaagtttgatccgggctctggtcgcttggagctgggtggcggtgtgcgcccgcgcc
gccatggacgagtgttcggacgagcagggcagaccgcagcgctgcatgcccgagttcgtg
aacgccgcttttaacgtgacggtggtggcgaccaacacctgcggctctccgcccgaggag
tactgcgtgcagaccggcgccaccggggtcaccaagtcctgccacatctgcgacgcccgg
gacccccggaaccaccacagcgccgtgtacctgaccgactacaacaaccagcaggacacc
acctggtggcagagccagaccatgctggcggggatccagtacccgaactccatcaacctc
accctgcacctcggtaaggccttcgacatcacctacgtccggctaaagttccacaccagc
cggcccgagagcttcgccatctacaagcggaccagcgagggggggccctgggtgccgtat
cagtactacagcggctcctgtgagaagacctaccagaagccgagccgaggcttcatccgc
accggagaggacgagcagcaggcgctctgtaccgacgacttcagcgacatctcgccgctc
accggcgggaacgtggccttctccacgctggagggtcgacccagcgcctacaacttcgac
tacagccccgtcctccaggattgggtgacggccaccgacatcagagtgaccctgaacagg
ctcaacacgttcggagacgaggttttcaacgaccccaaggtcctcaagtcctactactac
gccatctctgacttcgctgtgggaggaaggtgtaagtgtaacggccacgccagtgagtgt
gtgaagaacagcggaggacggctggtgtgtaactgcaaacacaacacggagggcgacgac
tgcaacgtctgcaaacccttctacaacgaccggccatggaggagagcgaccgccgacaat
gccaacgagtgtctgccctgcgactgtaacgggaaaagctctgagtgttacttcgacgct
gagctgtaccgggccacgggtcacggaggtcactgcagaaactgcgccgacaacaccgac
ggccccaactgtgagcgctgcctcgacaactactacagagaccagagcggcagccgctgc
ctgccctgtggctgcaacactgtcggctcggagtctcctcagtgcgacagcagagggatg
tgtgcatgtaaaccaggagtgaccggagagaagtgcgaccgctgtcagccgggataccac
agtctgaccgaggccggctgcaggccttgctcttgctcgccctctggcagcactcaggag
tgtgacgtcaacacgggacagtgtcgctgtaaagaccatgtggagggtttcagctgcgac
aggtgtaaactgggttacttcaacctggaccccagcaaccctcagggctgcaccccctgc
ttctgtttccagcactcgtctgtgtgcgacagcgccgacggcttcagcgtccacaccatc
agctcctccttctacagagatgacgagcagtggagcggtcagcagagagatggatccagt
gtcccggtgcagtggtctcccagcggacaggaaatctccctcgtctctgacgactacttc
cccatgtacttcgtagccccagagaagttcctggggaaccagatgctgagcttcggacag
aacctcagtctgagtttccgggtggaccggcgggacacacgtctgtcggccgaagatctg
gttctggagggagctaatctgagggtagccgtccccctcatcgcccagggcaacgcctac
cccaacgagaacatgcagacctacgtgttcaggctccatgacagtgctgattacccctgg
aggcctcccatcagccaatctgacttccagaaactcctccacaacctgacggccatcaag
atccgaggcacctacagcgagaggagtgctggttaccttgacgacgtctccttggtaaca
gcgaggcggggtccaggtgtcccggcccgctgggtggagcagtgcacctgtcctcagggt
taccagggtcaacactgcgagcagtgcactctgggataccgccgcgcccgccccgagctc
agagccttcagcccctgtgagccctgcaactgcaacggacacagcgacgcctgcaacccc
gacacaggtgcgtgcgactgtcagcacaacacggctggtttgagctgcgagcgctgtaaa
gacggtttctatggcgatgccacccaggggacgtcaggtgactgtaagccatgtccctgc
ccggccggagccacctgcgccgtcgtccccaagaccagagaggtggtctgcaccaactgt
cccgcgggaaccacaggtaaacgctgcgagctctgtgacgacgggttcttcggggaccct
ctgggtcagaacggtccggtccgagcctgcagggcctgcaagtgcagcgacaacatcgac
cccaacgctgtcggcaactgcaaccgcgagacgggagagtgtctgaagtgcatctacaac
accaacggcttcttctgcgaccgctgcaaggagggtttctacggcaacgccctggccgcc
aaccccgccgacaagtgcaaaccctgcgcctgttctcccttcggcaccgtggaccaacag
accagctgctctcaggtcaccggtcagtgtccgtgtctccccaacgtcgccgagcgcgac
tgcagcgcctgcgagcccggattcttcaacctgcagagcaggaagggctgcgaacggtgt
aactgtaatccgattggctccaccaacggtcagtgtgacatcaccacaggacagtgtgag
tgtcagcccggcgtcaccggcctgcactgtgaacgctgcgaggtcaacttcttcggcttc
agctcgtccggctgcaaaccctgcgactgcgaccctgagggctctcagtcgggtcagtgt
aaggaggacggtcgctgcgagtgtcggcccggcttcgtcggagctcgatgcgacatgtgt
gaggagaattacttctacaaccgctcggtgccgggctgccagcagtgtccctcctgctac
agcctggtcagagacaaggtgaaccagcagaggcagaagcttcatgacctgcagactctg
atcgataacctgggctcaggtcaggacacggtcagcgataaggccttcgaggaccggctg
aaggaggcagagagagccatcatggagctgctggaggaggctcagaccagcaaagacgtg
gaccggggtctgttggaccgcctgaacagcatcaacaacactctgaccactcagtggaac
cggctgcagaacatccgcaacacagtggacgacaccggcgctcaggccgaccgcgcccgc
aaccgagtccgagacgccgagaacctgatcgaccgagcccggcaggagctggacaaggcc
aaggacgccgtcagcaaagtggacatcaaacctcccggcgggacaggagagcccaacaac
atgacgctgctggcagaggaggctcgcagactggccgacaagcacaagatggacgccgat
cagatcgagaagatcgccaaagacgccaacgacacgtcgaccaaagcgtacaacctgctg
ctgaagactctggatggagagagcaggacgagccaggagatcgacgagctcaacaagaag
tacaacgaggcgaaggagctcgccaagaatctggagaaacaggccaacaaggttcaggcc
gaggctgaagacgctggaaacaaagctctgaagatctttgccaacctgaccagcctccca
ccgttcgacaccaaagctctggaggatgaagccaacaagatcaagaaggaggcgtcggac
ctggacaagctgatcgataagacggagaaggagtacaacgacctcagagacgacctgaag
accaaggaacaggaagtccgcaaactgctggagaaaggaaagagtgagcagcagacggca
gatcagctgttggctcgtgccgacgctgccaaagctctggctgaggaggcggcaaagaag
ggtcagtccaccttcagagaggccgagggcatcctgaacgacctccgagactttgacaag
agagtcaacgacaacaagaccgccgctgaggaggccatgaagaagatccctgccatcaac
gccaccatcatcggcgccaacgagaagaccaagcaggcggaggcagcgctcggcaacgcc
gccagcgacgcccgagaagccaagaagaaggcagaggaggcggagaagatcgccagcaac
gtgcagaagggctcagccaagaccaaggaggacgcagagaaggcattccaggacaccaac
aagctggacaacgaggtcaacgacatgatggaccagctgagcgccgccgagcaggagctg
gccaagaagaaggccgaggccgaccaggatatgatgatggcgggaatggcgtccagcaat
gccaaggaggccgaggacaacgcccgcaaggccaagagtgctgtgaagatggtcctgagc
accatcaccaccctgctggatcagctgggaaacatcgacaaagtggacctgagcaaactg
aaccagatcgacgagtcactgaagagggccaagggcaagatggccgacagcgacctggac
aggaagctggcggagctgaatgacgtggcgcggacccaggaggagatgatcggcgactac
gaccggcagatccgcgagatccacgccgacatcaccaacctcaacgacatcaagaacacg
ttacccgacggctgcttcaacacgccgtctctggagaggccttaa

  All links  
Ontology (1)   
   KEGG BRITE (1)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (87)   
   KEGG ORTHOLOGY (1)   
   RefGene (83)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (5)   
   RefSeq(nuc) (1)   
   GenBank (2)   
   EMBL (2)   
Protein domain (6)   
   Pfam (6)   
All databases (103)   

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