KEGG   Lates calcarifer (barramundi perch): 108886884
Entry
108886884         CDS       T04895                                 
Name
(RefSeq) general transcription factor IIE subunit 1
  KO
K03136  transcription initiation factor TFIIE subunit alpha
Organism
lcf  Lates calcarifer (barramundi perch)
Pathway
lcf03022  Basal transcription factors
Brite
KEGG Orthology (KO) [BR:lcf00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    108886884
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:lcf03021]
    108886884
Transcription machinery [BR:lcf03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIIE
     108886884
 Prokaryotic type
  Archaeal type
    TFE
     108886884
SSDB
Motif
Pfam: TFIIE_alpha TFIIE-A_C TF_Zn_Ribbon DUF1272 zinc_ribbon_15
Other DBs
NCBI-GeneID: 108886884
NCBI-ProteinID: XP_018537503
UniProt: A0A4W6DEK8
Position
LG1:complement(11886525..11897430)
AA seq 444 aa
MIEPELLTEVPAALKRLAKQVVRGFYGVEHALALDVLIRNPCVREEDMLELLKFDRKQLR
SVLNTLKADKFVKCRMRVETAPDGKTTRHNYYFINYRVLVNVVKYKLDHMRRRIETDERD
STNRASFRCPCCFSTFTDLEANQLFDPMTGTFRCTFCQTEVEEDESVCPDARTLVARFNE
QIEPIYALLRETEDVNLSHDLLEPEPTEIPALKQSRERSAVSGGNAASGPHREAWSNKGS
SYADLYTQNVVISMEEQDDQQKQANEGKAPKERPVWLTQSTVQGAYSEPDILKSRGDVVP
EAQDGGAGPGIGQLDENEEVMRALLIHEKRAVAGAGGGGASAATRGLASATANASDSESD
TSESDDDFPSGPPPAAAALQRAEEEEEDDDEFEEVGDEPVVMVGGRPFSYREVSQRPELV
EQMSAQEKEAYIEMGQNLFQDMFF
NT seq 1335 nt   +upstreamnt  +downstreamnt
atgatagaaccagagctactgaccgaggtccctgcagcacttaagcggctagccaagcag
gtggtaaggggtttctatggagtggagcacgccttggccctggatgtgctgatccgcaat
ccctgtgtacgtgaggaggacatgctggagctgctgaagtttgaccgtaaacagctgcgc
tcagtactcaacaccttgaaggcagacaagtttgtcaaatgccgcatgagggtggagaca
gccccagatggcaagaccacgcggcacaactactacttcatcaattacagggtactggtc
aatgtggtcaagtataaattggaccacatgcgacggcgcattgagacagatgagcgagac
tccaccaaccgtgcttccttcaggtgcccttgctgcttctccaccttcacagacctagaa
gccaaccagctgttcgacccaatgacaggtacatttcgctgcaccttctgccagacggag
gtagaagaagacgagtctgtctgtcctgatgctaggacgctggtggcacgcttcaatgag
cagatcgaacccatctatgcactgctacgtgagactgaagatgtcaacttgtctcatgac
ctgctggaacctgagcctactgagatccctgcgctcaaacagagccgggaacgttctgca
gtatccggaggaaatgctgcaagtggtccccaccgcgaagcctggtctaacaaaggctca
tcctacgctgacctgtacacccagaatgtggttatcagcatggaggagcaggatgaccaa
cagaaacaggccaatgagggcaaggcacctaaggagaggcccgtctggttgacccagagc
accgtgcagggtgcttacagcgagcctgacatcctcaagagccgtggagatgttgtgccc
gaagcccaggatggaggagctggtcctggaattggtcagttggatgagaatgaggaagtg
atgcgtgctctgctcatccatgagaagagggctgtggcaggagcaggtggaggtggagca
agcgctgctaccaggggacttgcctctgccacagctaatgccagcgactcagagagtgac
accagtgaatcagatgatgactttccctcaggtcctccccctgccgcagctgctctgcaa
cgggctgaagaggaggaagaggacgatgatgagtttgaggaggttggagatgagccagtg
gtgatggtgggaggtcgaccattctcatatcgagaggtgagccagagaccagagctagtg
gagcagatgtctgcacaggaaaaagaggcctacattgaaatgggacaaaacctcttccag
gacatgttcttctga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (11)   
   KEGG ORTHOLOGY (1)   
   RefGene (7)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (4)   
   UniProt (1)   
   RefSeq(pep) (3)   
DNA sequence (5)   
   RefSeq(nuc) (3)   
   GenBank (1)   
   EMBL (1)   
Protein domain (5)   
   Pfam (5)   
All databases (29)   

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