KEGG   Lates calcarifer (barramundi perch): 108887066
Entry
108887066         CDS       T04895                                 
Name
(RefSeq) LOW QUALITY PROTEIN: ubiquitin carboxyl-terminal hydrolase 1-like
  KO
K11832  ubiquitin carboxyl-terminal hydrolase 1 [EC:3.4.19.12]
Organism
lcf  Lates calcarifer (barramundi perch)
Pathway
lcf03460  Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:lcf00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03460 Fanconi anemia pathway
    108887066
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01002 Peptidases and inhibitors [BR:lcf01002]
    108887066
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:lcf04121]
    108887066
   03400 DNA repair and recombination proteins [BR:lcf03400]
    108887066
Enzymes [BR:lcf01000]
 3. Hydrolases
  3.4  Acting on peptide bonds (peptidases)
   3.4.19  Omega peptidases
    3.4.19.12  ubiquitinyl hydrolase 1
     108887066
Peptidases and inhibitors [BR:lcf01002]
 Cysteine peptidases
  Family C19: ubiquitin-specific protease family
   108887066
Ubiquitin system [BR:lcf04121]
 Deubiquitinating enzyme (DUB)
  Ubiquitin-specific proteases (UBPs)
   UBP/USP
    108887066
DNA repair and recombination proteins [BR:lcf03400]
 Eukaryotic type
  DSBR (double strand breaks repair)
   FA (Fanconi anemia) pathway
    Other FA pathway factors
     108887066
SSDB
Motif
Pfam: UCH UCH_1
Other DBs
NCBI-GeneID: 108887066
NCBI-ProteinID: XP_018537755
Position
Unknown
AA seq 780 aa
FETLFLSSLFSSCDQVVPGPSPCPASPGLLLPCEKRENLMPFVGLNNLGNTCYLNSILQV
LYYCPGLRGGIKKLYNLXKRKDKPKEETDKSEEQTESVAEFLPAHIELLGSFNSLITSVE
QLQSSFLLNPDSFSDGELATPPRKILHTLRQLNPMYEGYLQHDAQEVLQCILGYIQEACD
TIRKEQELEREDNDVTEVKMENGVHLDSSDSVTESKTPTEEDGQVSGKRKSDTEVGNAKK
KPKSAKSKKSEVEEDSISRNRPLTRSKRKSSSDITVDSTQNKDGKEEAAKEGMKKPNGEE
EGGSDSEGKGEKTSKEADGKRKKRAKLGWLRPSGKQPSIFSKFRSVGKISSMTVKTQNKP
EQENGQSDKKSQNEKNSDERSPQNMAEDKRAMKHQEGLDLMERLFQGRLVLRTRCLECES
FTERREDFQDISVPVLDDQPSSPDDLSEVSPDPKPELKTLKWAIAQFASVERIAGEDKYF
CETCHHYTEAERSLLFDKTPEVITIHLKRFSANSLELDPYAGLSKVNTPLQTPLTLSLEE
WCTHPSSTKGQHYELFAVVMHSGVTISSGHYTAYIRMSDLKDVKLWQQDRKEAEKEEEEE
KESKEGTRVKEEALDYDDGEVSFSLNTRGQRGASLASSKTGGKKLSEGGVGLLGGQRSLS
SYELGTSSSKHTDKTASSGATEGSKRRKTINSVGQNTEAGLKKEPEAGEEASVASCDGVG
ATEQQALNNLLEYEGKWLLFDDSEVRLFEEEDFLRACSPEMCSSSTPYLLFYRRMPEPGC
NT seq 2343 nt   +upstreamnt  +downstreamnt
tttgaaactctgtttttgtcttcactgttcagtagctgtgatcaggtggtccctggtccc
tctccctgtccagcctcacctggtcttctgctgccatgtgagaagagagagaacttgatg
ccgtttgtggggctcaacaacctgggcaacacctgctatttgaacagtatcttacaggtt
ctgtattactgtccaggactcagaggaggcataaagaaactgtacaacctgnacaaaaga
aaagacaaaccaaaggaagaaactgataaaagtgaagagcagacagaaagtgtagctgag
ttcttgccagctcacattgaacttcttggaagcttcaacagtctgataacctcagtggag
cagctccagtccagcttcctgctcaaccctgacagcttcagcgatggagagcttgccacg
cctcctcgcaaaatactacacacactcaggcaattgaaccccatgtatgaaggctatctt
caacatgatgcccaggaggtgctgcagtgcatcctgggatatatccaggaggcctgtgac
accatcaggaaggagcaggagctggagcgagaggataacgatgtgacagaagtcaaaatg
gagaatggcgtccatttggattccagcgactctgtaacagaatccaaaacccccacagag
gaggacggccaagtcagtggcaagaggaagagcgacacagaggtgggaaatgccaagaag
aagccaaaatctgccaagtctaagaaatctgaggtggaggaagacagcatcagcagaaac
agacccctcactcgctccaaaaggaagtcctccagtgacatcacagtggacagcacccag
aataaagacggaaaagaggaggcagcaaaggaggggatgaagaagccaaatggggaggag
gaaggagggagtgacagtgaggggaaaggtgaaaagacatctaaagaggcagatggaaag
agaaagaaaagagctaagctgggctggttgaggccttctgggaaacagccgagtattttc
tccaagttccgcagtgtggggaagatcagctccatgactgtgaagacccaaaacaaacca
gaacaggagaatggacagagtgacaaaaaaagtcagaacgagaagaacagcgatgagcga
tcaccgcaaaacatggctgaagacaagagagcaatgaagcatcaagagggcctggacctg
atggagcgcctgtttcagggccggctagttctgaggactcgttgtctggagtgtgagagt
ttcacagagcggagagaagacttccaggacatcagtgtcccagtgctcgatgaccaaccc
agcagcccagacgatctctcagaggtgtctccagacccaaaaccagagctgaagactctg
aaatgggctattgcccagtttgcctcagtggagcgtattgctggagaggacaaatacttt
tgtgagacttgtcatcactacacagaggctgagagaagtctgctgtttgacaaaactcct
gaagtgatcactattcatctgaagcgcttctctgccaacagtctagaattggacccgtat
gctggcctctctaaagtgaacactccgttgcagactcctcttactttgtctctggaggag
tggtgcacccatccatcatccactaagggtcaacactatgagctgtttgctgtggtcatg
cacagtggcgtcaccatcagcagcggccactacactgcctacatccgtatgtctgacctg
aaagatgtgaagctctggcagcaggaccgaaaagaagcagaaaaggaggaggaagaggag
aaggagagcaaagagggaacacgggtgaaagaagaagcgctggactacgatgatggagag
gtgtctttcagcttgaacacaaggggacagagaggtgccagtttggctagcagcaaaacg
ggaggcaaaaagctgtctgagggtggggttggactcctggggggccagaggagtttgtcc
agttatgagcttgggaccagcagcagcaaacacacagataaaacagccagcagtggagca
acagagggatctaaacggagaaaaacaatcaacagtgtgggccaaaacactgaagctgga
cttaaaaaggagcctgaggcaggagaggaagcatctgtggcttcttgtgatggggtgggg
gcgacagaacagcaggctttgaacaacctcctggaatatgaaggcaaatggctgctgttt
gatgactctgaggtgcgtttgtttgaggaggaggatttcctgcgagcctgctctcctgag
atgtgctcttcatcgacaccttacctgctgttctacagacggatgcctgaacctggatgc
taa

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Ontology (5)   
   KEGG BRITE (5)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (17)   
   KEGG ORTHOLOGY (1)   
   RefGene (13)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (2)   
   Pfam (2)   
All databases (29)   

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