KEGG   Lates calcarifer (barramundi perch): 108890994
Entry
108890994         CDS       T04895                                 
Name
(RefSeq) ATP-dependent RNA helicase DHX29
  KO
K18995  ATP-dependent RNA helicase DHX29 [EC:5.6.2.6]
Organism
lcf  Lates calcarifer (barramundi perch)
Brite
KEGG Orthology (KO) [BR:lcf00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03012 Translation factors [BR:lcf03012]
    108890994
Enzymes [BR:lcf01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.6  RNA 3'-5' helicase
     108890994
Translation factors [BR:lcf03012]
 Eukaryotic type
  Initiation factors
   Initiation associated factors
    108890994
SSDB
Motif
Pfam: OB_NTP_bind Helicase_C DEAD HA2_C AAA_22 HA2_N nSTAND3 nSTAND1 AAA_16 T2SSE FtsK_SpoIIIE ATPase DUF6183
Other DBs
NCBI-GeneID: 108890994
NCBI-ProteinID: XP_018543614
UniProt: A0A4W6DUK3
Position
Unknown
AA seq 1380 aa
MGGKKKKSAAPVAPAAAAAAAGRSGAAAAGNSVAEEPKKQPASNKPAKPAKENKSKAPKT
YSLANTAQVDTGGVSDKSILKVAIQADLEKKIIKLVNDFRQENGDKGPISGRLTSKKLLD
LYTALQKFNFKREHIEEAMKSSVLYGGDLHSALDWLCLNLKDEELPEGFSQQMQEESQRS
RPRFQPAAHQKPATPSPKAPINTRKETTKATEKDEAASMKDWILRYAEQSSDEEEEEEEG
GKKTAHNPELEEKFDPNDRYLILTAQLYDAKEMAAAAKTKGDKAGQRMAQDRIRVIQQEM
KQLESHPMFNPAIKVVDVPQKEKKTLPVSDDKEDITFNLFEQAEKEPPAEKVVKKNEPKD
IRNFDYTARSWTGKSPKQFLIDWVRKNLPKSPPPAFHKVPAGRYWKCKVRVQRTDDVLEV
CPTILTEDSMQAQHLAATLALYNLVKGQSVHQLLPPTYRDVWLEWRDSEQQQQEESRTAA
NKPRDQFISRLLTRLKQQQNQSQGQGSGSQSQAGLGQGGDEEPEESWENLAGLDIGDGGE
EMEDKSEKRGGRREGAGALEASRELFLKLRKSSLAQKLQAEREQLPVFQHRHRVLEALQR
HPVVVVAGETGSGKSTQIPQFLLEELLTGGKAAQPCNVVVTQPRRISAMSLACRVSQELG
CEDGPGSKSSLCGYQIRMENQSGEWTRLLYCTTGVLLRKLQHDRHLSSLTHIIVDEVHER
SVQSDFLLTILKDVVMRRSDLQLILMSATVDCDKFSSYFNRCPVITIPGRTFPVEVFHLE
DIVEQTGYVLEKDSEYSQKILEEEEDVSVSVTQKGGKTLQHQEVIVRDSSGWDLGPDLDH
FSSRTRQVLQYMNPNKINMDLLVDLMDYLDKSPQFADLDGAVLVFLPGLAHIQQLYDLLS
SDKRFRDKNRYRIVALHSTLSSKDQAAAFTVPPAGVRKIVLSTNIAETGVTIPDVVFVID
TGKTKENKYHESSQMSSLVETFVSKASAFQRQGRAGRVRNGFCFRLYPKYRFDAFMDYSI
PEILRVPLEELCLHIMKCQYGSPEEFLSRALDAPQPQSVSNAVNLLRKIGACHPDNHLLT
PLGHHLASLPVNVKIGKMLIYGAILGCLEPIATIAAAITEKSPFSTPMNRKEEANLAKAA
LALANSDHLTIYNAYLGWKNSRTEGQRAEMSYCRKHFLNRTALITIEDVKHELMKMMEQV
GFWSSRSSSHSKLQASALSKQQISVMNAVLTAGLYDSVARVLCTPSVDVLERVACTVETP
QGKAQVHPSSVNRNLQTHGWLLYQEKVKYTKIYLRDTTLISPFPMLLFGGDIDIQHRERL
ITLDGWIHFQAPVRIGVIFKHLRKLMDSLLEKKLENPRMNLEGERTIQIILDLIKSEHAV
NT seq 4143 nt   +upstreamnt  +downstreamnt
atggggggaaagaagaagaaatcggctgctccggtggccccggcagcagcggcagcagca
gccggcaggagtggtgctgccgcagcggggaacagcgtggcagaggagccgaagaaacag
ccagccagcaacaagccggctaaaccagccaaagagaacaagtctaaagctccaaagacc
tacagtcttgccaacactgcccaggtcgacacaggtggagtctcagacaagtctattctt
aaagttgctatccaagctgacctggagaagaagatcatcaagctggtcaatgacttcaga
caggagaatggtgataaagggcccatatcaggcagacttacaagcaagaaactgctggac
ctgtacacagctctgcagaagttcaactttaagagagaacatattgaggaggcaatgaag
agcagtgtgctctacggaggggatctccactctgctctcgactggctctgcctcaacctt
aaagatgaggagctaccagagggttttagccagcagatgcaggaggagagtcagaggagc
aggcccaggttccagcctgctgctcaccagaaacctgccactccaagtcccaaagcgccc
atcaacacccgcaaagagactaccaaggccactgagaaggatgaagctgcaagcatgaag
gactggatcctgaggtacgcagagcagagcagtgatgaggaggaggaggaagaggaagga
gggaagaagactgcacacaatcctgaactagaggaaaagtttgatccaaacgaccggtat
ttgatcctcactgctcaactgtatgacgctaaagaaatggcagctgctgccaagaccaaa
ggagacaaagcgggccagaggatggcacaggacaggatacgcgtcatacagcaagaaatg
aagcagctggagtctcaccccatgttcaatccagccataaaagtggtggacgtgccgcag
aaggaaaagaaaacacttcctgtcagtgacgacaaagaggacatcaccttcaatttattt
gaacaagctgaaaaggagcctcctgcagagaaagttgtgaaaaagaacgagccaaaggac
attcgcaatttcgattacacagctcgaagctggaccggaaagtctcccaaacagttcctc
atcgactgggtccgaaagaacctgcccaagagtccacctccggcttttcacaaggtccct
gctggaagatactggaaatgcaaggtgcgagttcagaggacagatgatgtcctagaggtt
tgtcccaccatcctgactgaggacagcatgcaggctcaacatctggcagccacactggca
ctctacaacctggttaaagggcagtctgtgcaccagctccttcctccaacctacagggat
gtatggttggagtggagagacagcgagcagcagcagcaggaagagagccgcaccgctgcc
aacaaacctcgagaccagttcatctcccggctcctgaccagactcaaacagcagcagaac
cagagccaaggtcaggggtcgggatcccaaagccaggcggggttgggccagggtggggac
gaagagcctgaggagtcctgggagaacctggctggtcttgatattggggatggaggagag
gaaatggaggacaagagtgaaaaaagaggagggaggagggaaggggcaggagcactcgag
gcgtccagggaactctttttaaaactgaggaagtcctcactcgcccaaaaactgcaggca
gagcgagagcagcttcctgtcttccaacaccgtcaccgtgtcctggaggctctgcagcgc
caccctgtggtagttgtggccggtgagacaggcagcgggaagagtactcagattcctcag
ttcctgctggaggagctgttgactgggggaaaagcggcacagccctgcaacgtcgtggtg
acccagccccgcaggatatccgccatgagcctggcctgcagggtcagccaggagctcggg
tgtgaggatggaccgggatcgaagtcgtcgctgtgcggataccagatccggatggagaat
cagtccggggagtggacccgtctcctgtactgtaccactggagttctgctcaggaaactc
caacacgacagacacctcagctctttgacgcacatcatcgtagatgaggtccacgagcgc
agcgtgcagtcagacttcctgctgaccatcctgaaagatgtcgttatgaggagatcagac
ctgcagctgatcctcatgagcgccacagtggattgtgacaagttctccagctacttcaac
cgttgcccggtgatcaccatccccggcaggactttcccagtggaggtgtttcacttagag
gacatagtggagcagacggggtacgtcctggaaaaggactcggagtacagccagaaaatt
cttgaagaagaggaagacgtcagcgtctctgtcactcaaaaaggcggcaagacattacaa
caccaggaggtgatagtgagggactcctcaggctgggacctgggtcctgacctcgaccac
ttcagcagcaggactcggcaggtgctgcagtacatgaaccctaataagatcaacatggac
ttgctggtagacctcatggactacttagacaaatccccacaatttgcagatttggatgga
gccgttctggtgttcctcccaggtctggctcacatccagcagctgtatgacctgctctcc
tcagacaagaggttcagggacaaaaacaggtacaggattgttgccctccactccaccctg
tcatcaaaggaccaggctgctgccttcacagtgccccctgctggagttaggaagattgtg
ttgtcgactaacattgctgagacaggtgtgactattcctgacgttgtgtttgtcattgac
actgggaagaccaaagagaataagtaccatgagagcagccagatgagttctctggtggaa
acgtttgtctctaaagccagcgccttccagaggcaggggagagcgggacgtgtccgaaac
ggcttctgcttcagactctacccaaaatacaggtttgatgccttcatggattactccata
ccagagatactacgggtcccactggaggagctctgccttcatattatgaaatgtcagtac
ggctccccggaggagttcctgagccgggccttggatgcccctcagccccagtcggtcagt
aacgccgtcaacctgctgagaaagattggcgcgtgtcaccccgacaatcacctcctcacc
cctctgggacaccacctggcgagtctgcccgtcaacgtcaagatcggcaagatgctgatc
tacggagccatcctcggctgcctggagcccatagcaacgatcgcagcagccatcactgag
aagtctcccttctccacaccaatgaacagaaaggaggaagctaatctggccaaggctgca
ctggcattagccaattctgatcacctgaccatatacaacgcatatctggggtggaagaac
tcacggactgagggacagagagcagaaatgtcctactgcaggaaacactttctcaatcga
acagctctcattacaatagaggatgtgaagcacgagctgatgaagatgatggagcaggtt
ggtttctggtcgtctcgctcctcctctcactccaagctgcaggcgtccgcgctgtccaag
cagcagatctcggtcatgaatgcggtgctgacggcggggctttacgacagcgtggcccgg
gtcttgtgcaccccgtccgtggatgtgctcgagcgagtggcctgcacggtggagacccct
caaggcaaggcccaagtccacccctcgtctgtgaaccgcaacctgcagacgcacggctgg
ctgctgtaccaggagaaggtgaaatacactaagatctacctgcgagacacaactctcata
tcacctttccccatgctgctgtttggaggtgacattgatattcagcacagagagaggctc
atcacattagacggatggatacactttcaggctcctgtacggatcggtgtgatattcaaa
cacctgaggaagctgatggactctttgctcgaaaagaagctggagaatccaaggatgaat
ctggaaggtgagaggaccatccagattattctggatctgatcaaatcagagcatgctgtg
tga

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Ontology (2)   
   KEGG BRITE (2)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (25)   
   KEGG ORTHOLOGY (1)   
   RefGene (21)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (3)   
   RefSeq(nuc) (1)   
   GenBank (1)   
   EMBL (1)   
Protein domain (13)   
   Pfam (13)   
All databases (47)   

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