KEGG   Lates calcarifer (barramundi perch): 108894294
Entry
108894294         CDS       T04895                                 
Name
(RefSeq) nuclear receptor ROR-alpha A isoform X1
  KO
K08532  RAR-related orphan receptor alpha
Organism
lcf  Lates calcarifer (barramundi perch)
Brite
KEGG Orthology (KO) [BR:lcf00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:lcf03000]
    108894294
  09183 Protein families: signaling and cellular processes
   03310 Nuclear receptors [BR:lcf03310]
    108894294
Transcription factors [BR:lcf03000]
 Eukaryotic type
  Zinc finger
   Cys4 thyroid hormone receptor-like
    108894294
Nuclear receptors [BR:lcf03310]
 1. Thyroid hormone like
  1F. RAR-related orphan receptor
   108894294
SSDB
Motif
Pfam: zf-C4 Hormone_recep MIOS_a-sol
Other DBs
NCBI-GeneID: 108894294
NCBI-ProteinID: XP_018548430
Position
LG2:complement(14203688..14277454)
AA seq 557 aa
MESSLQDTASDPGRSGSEPATPLTETPPSLETPRDGERLTPARRHSSSGSSSSGSSHSKG
LSAVKKTHTSQIEIIPCKICGDKSSGIHYGVITCEGCKGFFRRSQQSNAAYSCPRQKNCL
IDRTSRNRCQHCRLQKCLAVGMSRDAVKFGRMSKKQRDSLYAEVQKHRLQQQQQQQQQGS
LLLSHPSLSSPSPVEAEPLSPHYSLSSSGLTELPDELGGYMEQDSPAGGSVSSKADSGGE
GGGGGGGAFYLDIQPSPDQSGLDINGIKPEPLCDYGSSNGFFPYCSFSNGDSPPTVSMAE
LGETKGSDHLVQIISKSHLETCQYLREELQQMSWQNFLQDEVERYQSKPREVMWQLCAVK
ITEAIQYVVEFAKRIDGFMDLCQNDQIVLLKAGSLEVVFVRMCRVFDSQNNTVYFDGKFA
GPDVFKALGCDDLITSVFDFAKSMCSLHLTEDELALFSAFVLLSADRSWLQEKLQVEKLQ
QKIQLALQHVLQKNQREDGVLNKLRCKVSALRSLCSRHTEKLSAFRAIYPDIVRTHFPPL
YKELFGADLELTLQAND
NT seq 1674 nt   +upstreamnt  +downstreamnt
atggagtcgtccctgcaggatacagcgagcgacccgggcaggagcggctctgagcccgct
acaccgctcacagagacgccgccgagcctggagactccacgcgacggagagcgcctgaca
ccggccaggagacacagcagctccggctccagctcctccggctccagccacagcaaaggt
ttgtcagcagtgaagaagacacacacatctcagattgaaatcatcccctgtaagatctgt
ggagacaaatcttcaggaatccactacggagtgatcacctgcgagggctgtaagggtttc
ttcagacgcagtcagcagagtaacgccgcctactcctgtcctcgccagaaaaactgtctg
atcgaccgaacgagcagaaaccgctgccagcactgccgtctgcagaaatgtctggctgtg
ggcatgtcccgagacgctgtgaagttcggtcgtatgtccaagaagcagcgggacagtttg
tacgctgaggtgcagaaacaccgtctccagcagcagcagcagcagcagcagcagggctcc
ctcctcctgtcccacccaagcctcagcagccccagcccggtcgaggccgagccgctgtcc
ccccactacagcctctcctcctccggcctcacagagctccctgatgaactgggaggctac
atggagcaggactcccctgcaggaggatcagtgtcatccaaggcggactctggaggagag
ggaggaggaggaggaggaggtgcattctacctagacatccagccgtctccggaccagtcc
ggactggatattaacggcatcaaaccggagccgctgtgtgactatggatccagtaacggc
ttcttcccatactgctccttcagcaacggagactcaccacccaccgtgtccatggccgaa
ctcggtgagacgaagggatcagatcatctggtccaaatcatctccaagtctcacctggag
acgtgtcagtacctgagggaggagctgcagcagatgagctggcagaacttcctgcaggac
gaggtggaacgctaccagagcaagcctcgggaggtgatgtggcagctctgtgccgtgaag
atcactgaggccatccagtacgtggtggagttcgccaaacgtatcgacggcttcatggat
ctctgccagaatgaccagatcgtgctgctgaaagctggttctctggaggtcgtctttgtt
agaatgtgtcgagtgtttgactcgcagaacaacaccgtttactttgacgggaaatttgca
ggtcctgatgtcttcaaagctctaggctgtgatgatttgatcacatcagtgtttgacttt
gctaagagcatgtgttcactgcacctgactgaggacgagctcgctctcttctcagcgttt
gttctgctctctgcagaccggtcatggctgcaggagaagttgcaggtggagaagctgcag
cagaagattcagctggctctgcagcacgtcctgcagaagaaccagagagaagacggagtc
ctcaacaagctcaggtgtaaggtatcagcgttgcgttcactatgcagtcgacacacagag
aaactgtcagccttcagagccatttaccccgacatcgttcggacgcacttccctcccctt
tacaaggagttgtttggtgccgacctcgaactgacactgcaggccaatgactaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (14)   
   KEGG ORTHOLOGY (1)   
   RefGene (10)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (3)   
   RefSeq(pep) (3)   
DNA sequence (5)   
   RefSeq(nuc) (3)   
   GenBank (1)   
   EMBL (1)   
Protein domain (3)   
   Pfam (3)   
All databases (29)   

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