KEGG   Lates calcarifer (barramundi perch): 108901240
Entry
108901240         CDS       T04895                                 
Symbol
usp9
Name
(RefSeq) LOW QUALITY PROTEIN: probable ubiquitin carboxyl-terminal hydrolase FAF-X
  KO
K11840  ubiquitin carboxyl-terminal hydrolase 9/24 [EC:3.4.19.12]
Organism
lcf  Lates calcarifer (barramundi perch)
Brite
KEGG Orthology (KO) [BR:lcf00001]
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01002 Peptidases and inhibitors [BR:lcf01002]
    108901240 (usp9)
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:lcf04121]
    108901240 (usp9)
Enzymes [BR:lcf01000]
 3. Hydrolases
  3.4  Acting on peptide bonds (peptidases)
   3.4.19  Omega peptidases
    3.4.19.12  ubiquitinyl hydrolase 1
     108901240 (usp9)
Peptidases and inhibitors [BR:lcf01002]
 Cysteine peptidases
  Family C19: ubiquitin-specific protease family
   108901240 (usp9)
Ubiquitin system [BR:lcf04121]
 Deubiquitinating enzyme (DUB)
  Ubiquitin-specific proteases (UBPs)
   UBP/USP
    108901240 (usp9)
SSDB
Motif
Pfam: DUF3517 UCH UCH_1 FAST_1 Vps23_core RasGEF_N
Other DBs
NCBI-GeneID: 108901240
NCBI-ProteinID: XP_018558178
Position
LG1:22850391..22888103
AA seq 2583 aa
MTATTRGSPVGGNDSQGQGQAPDAQSQPPLPQNQTSSPNSSNENSPVSPPDEQGQGDGPP
QLEEEEPAFPHTDLAKLDDMINRPRWVVPVLPKGELEVLLEAAIDLSKKGLDVKCEACQR
FFRDGLTISFTKILTDEAVSGWKFEIHRCIINNTHRLVELCVAKLSQDWFPLLELLAMAT
NPHCKFHIYNGTRPSETVPAGAQLADDELFARPPDPRSPKGWLVDLINKFGTLNGFQMLH
DRFMSGQALNVQIIAALIKPFGQCYEFLTLHTVKKYFLPVIEMVPQFLENLTDEELKKEA
KNEAKNDALSMIIKSLKNLASRVPGQEETVKNLEIFRLKMILRLLQISSFNGKMNALNEV
NKVISSVSYYTHRHNPEEEEWLTAERMAEWIQQNHILSIVLRDSLHQPQYVEKLEKILRF
VIKEKALTMQDLDNIWAAQAGKHEAIVKNVHDLLAKLAWDFSPEQLDHLFDCFKASWTNA
SKKQREKLLELIRRLAEDDKDGVMAHKVLNLLWNLAHSDDVPVDIMDQALSAHIKILDYS
CSQDRDTQKIQWIDRFIEELRTNDKWVIPALKQIREICSLFGEAPQNLSQTQRSPHVFYR
HDLINQLQHNHALVTLVAENLSAYMETMRQFSKEEQAEFDPQTVRPGSRYSHVQEVQERL
NFLRFLLKDGQLWLCAPQAKQIWKCLAENAVFLCDREACFKWYSKLMGDEPDLDPDINKD
FFENNVLQLDPSLLTENGMKCFERFFKAVNCREGKLVAKRRAYMMDDLELIGLDYLWRVV
IQGSDDIASRAIDLLKEIYTNLGPKLQVNQVEIHEDFIQSCFDRLKASYDTLCVLDGDKD
SINCARQEAIRMVRVLTVLKEYINECDSDYHEERTILPMSRAFRGKHITLIVRFPNQGRQ
VDDLDIWSHTNDTIGSVRRGILTRIKANAAHTKIELFIGGEVVDPADDRKLIGQLNLKDK
TLITAKLTQVSANMPSSPDSSSDSSTGSPGNHGNHYSDGPNPEVESCLPGVIMSLHLRYI
SFLWQVADLGCNLNMPLLRDGARVLMKLMPPDNTTVENLRAVCLDHAKLGENSLSPSLDS
RFFGPSPSQVLYLIEVVYALLMPASATLGEDASDFQYNFLKSGGLPLVLSMLTRNNFLPS
ADMETRRGAYLNALKIAKLLLTAVGFGHVKAVAEACQPNAEGNIPVSPINQATHDQALVL
QSALQNIPNPASECMLRNVAIRLAQQISDEASKYIPDICVIRAVQKIVWASGCGTVQLVF
SSNEEISKIYEKTNAAKEPDGEDEQVCCEALEVMTLCFALMPTALDTLSKEKAWQTFIID
LLLHCHSKSVRQMAQEQFFLMATRCCMGHRPLLFFITLLFTVLGSTAKERAKHAGDYFTL
LRHLLNYAYNSNINLPNAEVLLNNEIDWLKRIRDEVKRTGETGVEETILEGHLGVTKELL
AFQTPEKKYYIGCEKGGANLIKELIDDFIFPASNVYLQYMKSGEFPTEQAIPVCSTPASI
NAGFELLVALAVGCVRNLKQIVDTLTDMYYLGCETLTEWEYLPPVGPRPNKGFVGLKNAG
ATCYMNSVIQQLYMIPPIRNGILAIEGTGTDVDDDMSGDEKQENESNVDPRDEVFSYHHQ
FDDKPSSKSEDRKEYNIGVLRHLQVIFGHLAASRLQYYVPRGFWKQFRLWGEPVNLREQH
DALEFFNSLVDSLDEALKALGHPAMLSKVLGGSFADQKICQGCPHRYECEESFTTLNVDI
RNHQNLLDSMEQYVKGDLLEGANAYHCEKCNKKVDTVKRLLIKKLPPVLAIQLKRFDYDW
ERECAIKFNDYFEFPRELDMEPYTVAGVAKLEGDDVNPENQVIQQNEPSEPTPPGSSKYR
LVGVLVHSGQASGGHYYSYIIQRNGGDGEKNRWYKFDDGDVTECKMDDEEEMKNQCFGGE
YMGEVFDHMMKRMSYRRQKRWWNAYILFYERMDSLDKDSELVKYISELTISSTKPHQVKM
PGVIECSVRKQNVQFMHNRMQYSLEYFQFIKKLLTCNSVYLNPPPGQDHLLPEAEEIAMI
SAQLAARFLFSTGFHTKKVVRGPASDWYDALCILLRHSKNVRYWFAHNVLFAYPNRFSEY
LLECPSAEVRGAFAKLIVFIAHFSLQDGPCPSPTASPGPSAQGCDNLSLSDHLLRAVLNL
LRREVSEHGRHLQQYFNLFVMYANLGLAEKTQLLKLNVPATFMLVALDEGPGPPIKYQYA
ELGKLYTVVSQLVRCCDVSSRMQSSINGNPPLPNPYGDTNLTAPVMPVQQLVAEILFVRT
SYVKKIIEDCSNSEETVKLLRFSCWENPQFSSTVLSELLWQVAYSYTYELRPYLDLLLQI
LLIEDSWQTHRIHNVLKGIPDDRDGLFDTIQRSKNHYQKRAYQCIKCMVALFSNCSVAYQ
ILQSNGDLKRKWTWAVEWLGDELERRPYTGNPQYTYNNWSPPVQSNETSNGYFLERSHSA
RMTLAKACELCPEEEPDEQEAPDDQDSSPPEDTSLYPHSPGTTQFQQNNHPHGQPYTGPA
AQHMNNPQRPGPASAPTPGPTQTPTPGPGPTPGPGPRAQENWESTEEVTPAPTSTPAPAP
PKE
NT seq 7752 nt   +upstreamnt  +downstreamnt
atgacggccaccacgcgtggctctccggtggggggcaatgacagtcagggccagggccag
gcacctgatgctcagagccaacccccactgccacagaaccagacatcatctcctaactca
tctaatgagaactctccagtgagcccaccagatgagcagggccagggggatgggccccct
cagctggaagaggaagagcccgctttccctcatactgacctagccaagctggatgacatg
atcaacaggcctcgttgggttgttccagttttgccaaaaggagaattagaagtcctcttg
gaagctgctatagacctgagtaaaaaaggactggatgtgaagtgtgaggcatgtcagagg
ttcttccgagatggtcttaccatctctttcacaaagatcctgacagatgaggcagtcagc
ggctggaagtttgagattcataggtgtatcatcaataacacacaccggttggtggagttg
tgtgtggccaagctctctcaggactggtttcctctactggagctgctggcaatggccacc
aaccctcactgcaagttccacatctacaatggcacacggccctctgagaccgtccccgcc
ggagcacagctggctgacgatgagctctttgcccgaccaccagacccacgatctcctaag
ggctggttggtggacttaataaacaaatttggcacgttaaacgggtttcaaatgttgcac
gatcgcttcatgagcggccaagcactgaacgtccagatcatcgctgcacttatcaagcct
tttggccagtgttacgagttcctcacattgcatacggtaaagaagtacttccttccagtc
atcgagatggttccccagtttctagagaatctcacagatgaggagctgaagaaagaggcc
aagaatgaagccaaaaacgacgcactgtccatgataatcaagtctctgaaaaatctggct
tctcgtgtaccaggacaggaggagaccgtgaagaatttagagatttttagattaaaaatg
attcttaggttattgcaaatttcttcttttaacggcaaaatgaatgcactaaatgaagtt
aacaaggtgatctccagtgtgtcctactacactcatcggcacaaccctgaagaggaggag
tggctgactgcagagcgcatggcggagtggatccagcagaaccacatcctgtccattgtg
ctcagggacagtttgcaccagccacagtatgttgagaaactggagaagatccttcgcttc
gttatcaaagagaaagctcttacaatgcaggatctggacaacatctgggctgcacaggct
ggtaagcatgaggccattgtgaagaatgtccatgaccttctggccaagcttgcatgggac
ttctcacctgagcagcttgatcatctttttgactgtttcaaggcaagctggaccaatgcc
agcaagaagcagcgtgaaaaactgctcgaacttatccggcgcttggctgaggatgataag
gatggtgtgatggcccacaaggtcctcaacctgttgtggaacctggcacacagcgatgat
gtgcctgtagacatcatggaccaggctcttagtgctcacatcaaaatattggattacagt
tgctcacaggacagagacactcagaaaatccagtggatagatcgcttcatagaggagcta
cgaaccaatgacaaatgggtgatccctgccctgaagcaaatcagagaaatctgtagcctc
tttggagaagctcctcaaaaccttagtcaaacccagagaagtcctcatgtgttttaccgc
catgatctgatcaaccagctgcagcataaccatgctttggtgactttggtggctgagaac
ctctcagcctacatggagaccatgaggcagttctccaaagaagaacaagctgagtttgac
ccccagacagtcaggcctggaagccgctacagccatgtccaggaagtccaggaacgactc
aacttcctgaggttcctgctaaaggatggccagttgtggctgtgcgcccctcaggccaag
cagatctggaagtgtttggctgagaatgcagtgttcctctgtgaccgtgaggcctgcttc
aaatggtactccaagctgatgggtgatgagccagacctggacccagacatcaataaggac
ttctttgagaacaatgttcttcagttggacccatctctgcttacggagaatggcatgaaa
tgctttgagaggttcttcaaagctgtcaactgcagggagggcaagctggtagcaaagcgc
agggcctacatgatggatgacctggaactaataggcttggactacctctggagggtggta
attcaaggaagtgatgacatcgccagccgagcaatcgacctgctgaaagagatttatacc
aacctcggaccaaaactacaagtcaatcaggttgaaattcatgaggatttcatccagtca
tgttttgaccgtctgaaggcatcctatgacaccctgtgtgtgttggatggagacaaagac
agcatcaactgtgcccgtcaggaggccatccggatggtgcgagttctcactgtgctcaaa
gagtacatcaatgagtgtgacagtgactaccatgaggagaggactatactgcctatgtcc
agagctttccgtgggaagcacatcacattgatcgtacgtttccccaaccaaggccgtcag
gtagatgacctggatatctggtcacatactaatgacacaattggctcagttcggcgtggc
atccttaccaggatcaaagctaatgctgcacataccaagatagagctctttattggtgga
gaggttgttgatccagctgacgacaggaagctgattgggcagctcaatttgaaggacaaa
acgctgatcacagccaagctgacccaggtgagtgccaacatgccctcaagcccagacagc
tcctctgactcatccactggctctcctggtaaccatggcaaccactatagtgatgggccc
aaccctgaggtggagagctgtcttcctggtgtgattatgtcactgcatctgcgctacatc
tccttcctgtggcaagtggctgacctgggctgcaacctcaacatgcctctgcttagagat
ggagctcgagttctcatgaaactcatgcccccagataacactacagtggagaatctgaga
gctgtttgtctggaccacgccaagctcggtgagaacagcctcagtccttccctggactcg
cgcttcttcggcccttcaccctcacaagtgctctacctcattgaggttgtgtatgctttg
ctaatgccagccagtgccaccctgggcgaggacgccagtgacttccagtacaacttcttg
aagagtggcgggctgcccctggtgctgagcatgctcaccaggaataacttcctcccatcg
gcagatatggagactcggcgtggggcatatctcaatgcgctgaaaattgccaagctcctc
ctgactgctgtgggttttggacatgtgaaggctgtggctgaggcctgccagcccaacgca
gagggaaatattcccgtctctccgattaaccaggccactcatgaccaggcgctggttctc
cagagtgccctgcaaaacatccctaaccctgcctcagaatgcatgctgcgcaacgtagcc
atccgcctggcccagcagatttctgatgaggcatcaaagtacatcccagacatttgtgtg
atccgagcggtacagaaaatagtgtgggcatcaggctgtggtactgtgcaacttgtcttc
agttccaatgaagaaatcagcaagatatatgagaagaccaatgcagccaaggagccagat
ggggaagatgagcaggtgtgctgtgaggccctagaagtgatgacactgtgttttgccctc
atgcccacggctctggacacactcagtaaggagaaggcttggcaaaccttcatcatagac
ttgctgctacactgccatagcaaatctgttcgtcagatggcccaagagcagtttttccta
atggcaactaggtgctgtatgggccatcgacccctccttttctttatcacccttctcttc
actgtgctagggagtacagccaaggagcgagccaaacatgctggggactatttcactttg
ctcagacatctgctgaactatgcctataacagcaacatcaacctgccaaatgctgaggtg
ctgctcaacaatgagatcgactggctaaaacggataagggatgaagttaagaggacgggg
gagactggtgtggaggagaccatcctggagggccaccttggggttaccaaagaacttcta
gccttccagacaccagagaagaaatattacatcggctgtgagaagggaggagcgaacctc
ataaaggagctgattgacgacttcatcttcccagcatctaatgtttaccttcagtacatg
aagagtggggagttccccacagagcaggccatcccagtgtgcagcacccctgcatccatc
aacgctggctttgagctcctggtggcgctggctgtcggctgtgttcgcaacctcaaacag
atagtcgacactctgactgacatgtactacttaggttgtgaaacgttgacagagtgggag
tacttgcctccagtggggccacggcccaacaaaggctttgtaggtctgaagaacgccggg
gccacctgctacatgaactctgtcattcagcagctgtacatgatccctcctatccgcaat
ggcatcctggccatcgagggcacgggcactgatgtggatgatgacatgtcaggggatgag
aaacaggagaatgagagtaatgtggatcctcgtgatgaggtgttcagctaccatcatcag
tttgatgataagccctccagtaagtcagaggacaggaaagagtacaacattggggtactg
cgtcacctacaggtcatctttggccatctggctgcatccagactgcagtactatgtccct
aggggattctggaaacagttcaggttatggggtgagccagtgaacttgcgagaacagcac
gacgctttggagtttttcaactctttggtggacagtctggatgaagctctgaaagccctg
ggccaccctgccatgctgagcaaggtgctgggaggatcctttgctgaccagaagatctgt
cagggatgtccccacaggtatgagtgtgaggagtcatttacaacactcaatgtagacatc
agaaaccaccagaacctgttggactccatggagcagtatgttaaaggagatctgctggag
ggagccaatgcctaccactgtgagaagtgtaataagaaggtggacacagtgaagcgcctg
ctgattaagaagctgccaccggtcctggccatccagctgaaacgctttgactatgactgg
gagagggagtgtgccatcaagtttaatgactactttgagttccccagggagctggacatg
gagccgtatacagtagctggtgtggccaaactagagggcgatgacgtcaacccggagaac
caggtgatccaacagaacgagccctctgaacccacaccaccgggtagctccaagtatcgt
ctggtgggagtgctggtccactcaggccaggctagtggaggacactactactcctacata
atccagaggaatgggggcgatggcgagaagaaccgctggtacaagtttgatgatggtgat
gtgactgagtgcaagatggacgatgaggaggagatgaagaaccagtgctttggaggggag
tacatgggcgaggtgttcgatcatatgatgaaaaggatgtcgtaccggaggcagaagcgc
tggtggaatgcctacatccttttctatgagcgaatggactcactggacaaggacagcgag
cttgtcaaatacatctcggagctgacgatctcctccaccaagccgcatcaggtcaagatg
cctggtgtcatcgagtgcagcgtccgcaagcagaacgtccaattcatgcacaaccgaatg
caatacagcctggaatatttccagttcattaagaaacttctgacctgtaacagtgtctat
ttaaaccctcctccaggacaagaccatcttctgccagaggcagaagagattgctatgata
agtgctcagctggctgctaggttcctcttcagcacaggttttcacaccaagaaagtagta
cggggtcctgccagtgactggtatgacgccctctgcatcctgctgagacacagtaagaat
gtacgctattggtttgcacacaacgttctgtttgcttaccctaaccggttctccgagtac
ctgcttgagtgcccgagcgctgaggtccgtggtgcatttgccaagctcatcgtctttatc
gctcacttctccctgcaagacggcccctgcccctcccccaccgcctcgcctggaccctct
gctcagggctgtgataacctcagtctaagtgaccacctgttgagagctgtactcaacctg
ctcagaagagaggtttctgaacacggccgtcacctgcagcagtacttcaacctctttgtc
atgtacgccaatctgggcttggcagaaaagacccagctgctcaagctgaatgtccctgcc
acgttcatgttggttgctctggacgagggtcccggacctcccattaagtaccagtacgct
gagctgggcaagctctacactgtggtctcccagctggtccgctgctgtgatgtctcctca
cgcatgcagtcctccatcaatggtaatcctcctcttcctaacccgtatggggacaccaac
ctgacagccccagtgatgcctgttcagcagctggtggcagagatcctgtttgtgaggacc
agctacgtgaagaagatcattgaagactgcagcaactctgaggagacagtgaagctgctt
cgcttcagctgctgggagaacccccagttctcctccactgtgctcagtgaactgctctgg
caggtggcgtactcctacacctatgagctgaggccttacctggacttgctgctacagatc
ctgctcatcgaggactcgtggcagacgcacaggatccacaatgtgctgaagggaattcca
gacgacagagatggactttttgacaccatccagcgctctaagaaccactaccagaaacgg
gcctatcaatgcatcaagtgcatggtggccctgttcagcaactgctctgtggcttatcag
atcctacagagtaacggcgacctgaaacgaaagtggacgtgggcggtagagtggttaggg
gacgagctggagaggaggccgtacacagggaacccccagtacacctacaacaactggtcc
cctccggttcagagcaacgagacctccaacggatatttcctggaacgctcgcacagtgca
cgtatgaccctggccaaggcctgtgaactctgtcctgaagaggagccagatgaacaggaa
gcacctgatgatcaagactcctccccacctgaggacacctctttgtacccacattctcct
ggaaccacccagtttcagcagaacaaccacccccacgggcagccgtacaccgggcccgct
gcccagcacatgaacaacccccagcgtcccggtcctgcctctgctccgactcctggcccc
acccagaccccgaccccaggccctggtcccactcccggcccaggcccgcgagcacaagag
aactgggagagcaccgaggaggtcacccccgccccgacctctaccccggcacctgccccg
cctaaggagtaa

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Ontology (4)   
   KEGG BRITE (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (32)   
   KEGG ORTHOLOGY (1)   
   RefGene (28)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (3)   
   RefSeq(nuc) (1)   
   GenBank (1)   
   EMBL (1)   
Protein domain (6)   
   Pfam (6)   
All databases (48)   

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