KEGG   Latimeria chalumnae (coelacanth): 102361535
Entry
102361535         CDS       T02913                                 
Symbol
DHX38
Name
(RefSeq) DEAH-box helicase 38
  KO
K12815  pre-mRNA-splicing factor ATP-dependent RNA helicase DHX38/PRP16 [EC:5.6.2.6]
Organism
lcm  Latimeria chalumnae (coelacanth)
Pathway
lcm03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:lcm00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    102361535 (DHX38)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:lcm03041]
    102361535 (DHX38)
Enzymes [BR:lcm01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.6  RNA 3'-5' helicase
     102361535 (DHX38)
Spliceosome [BR:lcm03041]
 Complex C
  Other components
   Step II factors
    102361535 (DHX38)
SSDB
Motif
Pfam: OB_NTP_bind Helicase_C HA2_C HA2_N DEAD AAA_22 AAA_19 nSTAND3 T2SSE SRP54 Flavi_DEAD AAA_16 Sigma54_activ_2 AAA_7
Other DBs
NCBI-GeneID: 102361535
NCBI-ProteinID: XP_014346344
Ensembl: ENSLACG00000013007
Position
Un
AA seq 1245 aa
MEEEDASIHRLEGCDPQRQVGGLIVKKKSAAEEQHVFKAPAPRTSLLGLDLLAAQKRKER
EEKEEAEEHKKSKVSSYKDWEEGKDDSGSDDESGDKISRGTRKERNYRAVGVETPSHTGG
VSEEFKERNRQRERERREQGVYASSKDEKERKRDREKVRDRNRKRDKDDRDKSKYSSSRS
ERGERDRSQREGWSDRSSRERRRDEPESPRHRPKDALTPSRSSWDEDDSGYGSIRRSQWE
SPSPALSHKDSERSARSHRSSVRESERRDRDRSVRNRYSDDTPLPTPSYKYNEWADDRKH
LGSTPRLSRGKGRKEGEEDGIAFDTEEERQQWEEDQRQADRDWYMMDEGFDEFHNPLAYA
SEDYVKKREQHLQKQTQKRISAQKRQINEDNERWETNRMLTSGVVHRLEVDEDFEEDNAA
KVHLLVHNLVPPFLDGRIVFTKQPEPVIPVKDATSDMAIISRKGSLLVRKHREQKERKKA
QHKHWELAGTKLGDIMGIKKEEEEKDQAVGEDGNVDYRTEQKFANHMKDKSEASSEFAKK
KSIVEQRQYLPIFAIRQELLNIIRDNSIVIVVGETGSGKTTQLTQYLHEDGYTTYGMIGC
TQPRRVAAMSVAKRVSEEMGVNLGEEVGYAIRFEDCTSEGTVIKYMTDGILLRESLREAD
LDHYSAVIMDEAHERSLNTDVLFGLLREVVARRSDLKLIVTSATMDAEKFATFFGNVPIF
HIPGRTFPVDILFSKTPQEDYVEAAVKQALQIHLSGAPGDILIFMPGQEDIEVTSDQIIE
RLEELENAPALAVLPIYSQLPSDLQAKIFQKAPDGVRKCIVATNIAETSLTVDGIMFVID
SGYCKLKVFNPRIGMDALQIYPISQANANQRSGRAGRTGPGQCFRLYTQSAYKNEMLTTT
VPEIQRTNLANVVLLLKSLGVQDLLQFHFMDPPPEDNMLNSMYQLWILGALDNTGALTPT
GRLMVEFPLDPALSKMLIVSCDMGCSSETLIVVSMLSVPAIFYRPKGREEESDQIREKFA
VPESDHLTYLNVYLQWKNNNYSTIWCNDHFIHAKAMRKVREVRAQLKDIMVQQRMSIASC
GNDWDILRKCICAAYFHQAAKLKGIGEYVNVRTGMPCHLHPTSSLFGMGYTPDYIVYHEL
VMTTKEYMQCVTAVDGEWLAELGPMFYSIKHAGKSRQENRRRAKEEISAMEEEMALAEEQ
LRARKEEQEKKNLLNTGRSAKIYTPGRKEQGTPMTPRRTPARFGL
NT seq 3738 nt   +upstreamnt  +downstreamnt
atggaggaggaggatgcctccatccacaggctggaaggctgtgatccccagaggcaggtt
ggagggttgattgtcaaaaagaaaagtgcagctgaggagcagcacgtcttcaaggctccg
gccccgcggacctccctgcttgggttggatctactggctgcacaaaagaggaaagagcgg
gaagagaaagaggaggcagaggagcataagaaatccaaagtgtcttcgtataaggactgg
gaggaagggaaagatgactcagggtctgatgacgagagtggagacaagatcagcaggggc
accaggaaagagaggaattatcgtgctgtaggagtggagacgccgtcgcacactggtggt
gtcagtgaagaattcaaagagcgtaatcggcagagggagcgagagcgtagggaacaaggg
gtgtatgcgtcctccaaagatgagaaggaacgaaagagagaccgtgaaaaagtccgagac
cgtaacaggaaacgagacaaagatgaccgagacaagagcaagtacagtagcagcaggtct
gagaggggtgagcgggacaggtcgcagagggaaggctggtcagacagaagcagtcgggag
aggaggagggatgagcctgaatcccctcggcacagacctaaagatgctcttactccatct
cggtcgagctgggatgaggatgacagtggatatggcagcattcggcgttcccagtgggag
tctccatcccctgccctgtcacataaagactccgagcgtagtgcacgcagccatcgttcc
tctgtccgtgagagtgagaggcgggacagagacaggtctgtcagaaatcgatactcagat
gacacccctctgccaaccccttcctacaaatacaatgaatgggccgatgacagaaaacat
ttgggctcgacccccagactttcccgcggtaaaggaagaaaggaaggggaggaagatggc
attgcttttgacacagaggaggagaggcaacagtgggaggaagaccagaggcaagcggat
cgggattggtacatgatggatgaaggtttcgacgagtttcacaacccactggcatatgcc
tcggaggattatgtgaagaaacgggagcagcatctccagaagcagacgcagaaacgcatc
tccgcgcagaagaggcagatcaatgaggataacgagcgctgggagacgaaccgcatgctg
accagtggcgtagtccaccgcttggaagtggatgaagattttgaagaagacaatgccgca
aaggtccatctgctggttcataacctggtgccaccattcctagatgggaggatcgtcttt
accaaacaaccagagcctgtgattccagtaaaagatgcaacctctgacatggcgatcatc
tctcggaaaggaagtctgttggtgaggaagcacagggagcagaaagaacgtaagaaggcc
cagcacaagcactgggagctggctggtaccaaactgggtgacattatggggataaagaaa
gaggaagaggagaaggaccaagctgtgggtgaagacggcaatgtggattacaggacggag
cagaaatttgccaaccacatgaaagataagagcgaggcaagcagtgaattcgcaaagaag
aaatccattgtagagcagcggcaatatctgcccatctttgccatccgtcaggaattgctc
aacatcatacgggacaacagtattgttattgtggtaggtgagactgggagcgggaaaacc
acccaactgacccagtacctgcacgaagacggctacacgacctacgggatgattggctgc
acccagcccaggcgtgtggcagccatgtcagtcgccaagcgagtcagtgaggagatggga
gttaacctcggggaggaggtgggctatgccattcgctttgaagactgcacgtcagagggc
acggtgatcaagtacatgacggatggtattttgctgcgcgagtctctgagagaggcagac
ctggaccattacagtgctgtcatcatggacgaggctcacgagagatccctcaataccgat
gtgctctttggtctgctcagagaggttgtggctcgaagatctgacttgaagctgattgtg
acatcagccacaatggatgcagagaagtttgccacattttttgggaatgttccaattttc
cacattcctggaaggacttttcctgtggatatcttatttagtaagactccacaggaagac
tatgtggaagcagcagtcaaacaagctctgcagattcacctctctggggctcctggagat
atactgatattcatgcctggccaggaagacattgaggtgacgtctgaccagataattgag
cgtttggaagagttggagaatgcccctgctttggctgtgctacccatctactctcaacta
ccctctgacctgcaggccaagatctttcagaaggccccagatggagtgaggaaatgcatc
gtagctactaacattgcagagacgtccctgactgtagatggtatcatgtttgtgatcgac
tcgggctactgcaaacttaaggtgtttaaccccaggatcggtatggatgctctacagatc
taccccatcagtcaggctaatgccaatcagaggtcaggacgagctggaaggacaggacct
ggacagtgcttcagactgtacactcagagtgcatataagaatgaaatgctgaccaccaca
gttcctgagatccaacgcaccaacttagccaacgtggtgctgctgctgaagtcccttggg
gtccaggacctgctgcagttccacttcatggaccctccccctgaggacaacatgctcaac
tctatgtaccagctctggatcctgggagcccttgacaatacaggtgccttgaccccaaca
ggacggctgatggtggagttccctttggacccagctctatccaaaatgttgattgtgtcc
tgtgacatgggctgtagctcagagaccctcattgtcgtatccatgctctctgtacctgct
atattctaccggccaaagggcagggaagaggagagcgatcagatccgggaaaagtttgct
gtcccagaaagtgaccacctaacctacctaaatgtctacttgcagtggaagaacaacaac
tactccaccatctggtgtaatgatcactttattcatgctaaggccatgaggaaggtgagg
gaggtccgagcccagctaaaggacatcatggtccagcagcggatgagtattgcatcttgt
ggcaacgactgggacatccttcgcaaatgcatctgtgctgcttacttccaccaggccgca
aagctcaagggtattggcgagtacgtaaacgtaaggactgggatgccctgccacctccac
cccaccagctccctcttcgggatgggttacacacctgactatattgtttatcatgagctg
gtcatgactaccaaggagtacatgcagtgtgttactgcagtggatggagaatggctggcg
gagttgggtccaatgttctatagtatcaagcatgctgggaaatccagacaggaaaaccgt
cgccgggcgaaggaggagatctcagcaatggaagaggagatggcacttgcagaggagcag
ctccgagccaggaaggaggagcaagagaaaaagaacctgctgaacacgggacggtcagcc
aaaatttatactcctgggcgcaaggagcagggaacaccgatgacaccccgacgcacaccg
gcacgcttcggattgtag

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (27)   
   KEGG ORTHOLOGY (1)   
   RefGene (22)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (5)   
   RefSeq(nuc) (1)   
   GenBank (2)   
   EMBL (2)   
Protein domain (14)   
   Pfam (14)   
All databases (52)   

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