KEGG   Larimichthys crocea (large yellow croaker): 104918544
Entry
104918544         CDS       T04659                                 
Symbol
aplf
Name
(RefSeq) aprataxin and PNK-like factor
  KO
K13295  aprataxin and PNK-like factor [EC:3.1.-.-]
Organism
lco  Larimichthys crocea (large yellow croaker)
Brite
KEGG Orthology (KO) [BR:lco00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:lco03400]
    104918544 (aplf)
DNA repair and recombination proteins [BR:lco03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Other BER factors
     104918544 (aplf)
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Other NHEJ factors
     104918544 (aplf)
SSDB
Motif
Pfam: zf-CCHH FHA_2 FHA CLEC16A_C
Other DBs
NCBI-GeneID: 104918544
NCBI-ProteinID: XP_019110317
Position
X:complement(28973656..28988201)
AA seq 513 aa
MSDFDLVPVDGGDPIHLPPGETVVGRGPFLRVNDKRVSRHHGLLENLNGELRLKPTHVNP
CFVQSSLTDDPRPLQRDSWYPLHHGDLFSLLPGQYIYKVMAVGAEDQTPRNSQMIEEEEE
EGEEEGLPVSHKPDVEPPPPIRQDFGQTPPDEEPTAAALSNQDDTDSPDRSLNKGDCAQP
KEMEDDQSEVTPSEPKRRVLPAWMMVAAAHPSSSSSPKVQSAVKRSKGAAAASTSTKRTA
DKPAKASSPEEAEVSEEEMPKKRRRKMHVEEEEEEEKAAPSKTNVPSERPTVRLQTESNR
SEVSDESDSFTMEVEEEERGGGTSTAQINTMTQPYESTQPENEDKKLKNRRQTTQRAESV
GSNGGSVPGSVKPNLRTPCPYGKDCYRKNPIHFQECSHPGDTDYEEEEEEEETEEADRPE
CPYGTDCYRKNPLHRKEYKHTKRPAYTTRTIPKKTPADDEDEDEDLEDDSFINDDSEDVG
DDSDYIPPDSDDSGKEDVKRLQKEAKAFVKRRK
NT seq 1542 nt   +upstreamnt  +downstreamnt
atgtccgacttcgacctcgttccggtggacggcggggatcccatccacctgccgcccggg
gagaccgtggtgggcaggggacctttcctgcgggtcaatgataagagagtgtccagacat
cacgggctgctggagaacctgaacggagagctgcgtcttaaacctacccacgtgaacccg
tgctttgttcagtcatccctgaccgacgaccctcgacctctgcagagagattcctggtac
cctcttcatcatggagacctgttctctctgctgccggggcagtacatctacaaggtgatg
gccgtgggtgcagaagaccaaactcccagaaacagtcagatgattgaagaagaggaagaa
gaaggagaagaagaaggacttcctgtttctcacaagccagatgtggaaccacctcctcct
atcagacaggactttggacagactccccccgatgaggagcccacagcagcagctctgtca
aaccaagacgacactgacagtccagacagaagtttaaataagggagactgtgcacaaccc
aaagaaatggaggatgaccaaagtgaagtcactccatctgaacccaagagaagagtttta
cctgcgtggatgatggtggcagctgcacatccttcctcttcctccagcccaaaagttcaa
tcagctgtgaagagaagtaaaggagctgcagcggcgtcaaccagcactaaacggacagca
gacaaacctgcaaaggcttcctcacctgaggaggcagaggtcagcgaggaggaaatgcca
aagaagaggagaaggaagatgcatgttgaagaagaagaagaagaagaaaaagcagcccca
tctaaaacaaatgttccgtcagagcggcccacggttcgtctacagactgaatctaacagg
tctgaggtgagcgacgagtctgacagcttcaccatggaggtggaggaggaagaaagagga
ggggggacttctacagctcagataaacaccatgacgcagccgtatgaaagcacgcaaccc
gagaatgaggacaagaagttgaaaaacagacgacaaacaacccaacgagctgagtctgtc
gggtcaaacggtggctctgtgccaggctctgtcaaacctaatctcagaacgccatgtcct
tatgggaaggactgctacaggaagaacccgatccatttccaggagtgcagtcaccccggt
gacaccgactacgaggaggaggaagaggaggaagagacggaggaagcagaccgacctgag
tgcccctacggcactgattgctacaggaaaaatcctcttcacaggaaagaatacaaacac
acaaagagaccagcctacactacacgtaccatccccaaaaagacccctgctgatgatgaa
gatgaagatgaggacttggaagatgacagcttcattaatgatgacagcgaggacgtgggt
gatgactcagactacatccctcccgactccgatgacagcggtaaggaggacgtcaaacga
ctgcagaaagaagcaaaggcctttgtgaagaggaggaagtag

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (34)   
   KEGG ORTHOLOGY (1)   
   RefGene (30)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   RefSeq(pep) (2)   
DNA sequence (2)   
   RefSeq(nuc) (2)   
Protein domain (4)   
   Pfam (4)   
All databases (45)   

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