KEGG   Larimichthys crocea (large yellow croaker): 104919028
Entry
104919028         CDS       T04659                                 
Symbol
atg4c
Name
(RefSeq) cysteine protease ATG4C
  KO
K08342  cysteine protease ATG4 [EC:3.4.22.-]
Organism
lco  Larimichthys crocea (large yellow croaker)
Pathway
lco04136  Autophagy - other
lco04140  Autophagy - animal
Brite
KEGG Orthology (KO) [BR:lco00001]
 09140 Cellular Processes
  09141 Transport and catabolism
   04140 Autophagy - animal
    104919028 (atg4c)
   04136 Autophagy - other
    104919028 (atg4c)
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01002 Peptidases and inhibitors [BR:lco01002]
    104919028 (atg4c)
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:lco04131]
    104919028 (atg4c)
   03029 Mitochondrial biogenesis [BR:lco03029]
    104919028 (atg4c)
Peptidases and inhibitors [BR:lco01002]
 Cysteine peptidases
  Family C54: Aut2 peptidase family
   104919028 (atg4c)
Membrane trafficking [BR:lco04131]
 Autophagy
  Autophagosome formation proteins
   Atg8 conjugation proteins
    104919028 (atg4c)
Mitochondrial biogenesis [BR:lco03029]
 Mitochondrial quality control factors
  Mitophagy factors
   Autophagy-related proteins
    104919028 (atg4c)
SSDB
Motif
Pfam: Peptidase_C54
Other DBs
NCBI-GeneID: 104919028
NCBI-ProteinID: XP_010729236
Position
XVII:complement(2314752..2323810)
AA seq 482 aa
MENKGSDEVEKLKTKFLSVWHNVKYSWALKLKTSFSRNSPVLLLGKCYHFKAEDDDSPTE
ACYEPSEEDFVMGNVEAFRKDFTSRVWFTYREEIPPLPGSTLTSDCGWGCMLRAGQMMLA
QALILHFLGRDWTWSKALALQPLDTETWTTTAAKRLVASLESSLQSSPGPSDHESPPVQQ
AQASASAEEADEHLKEMYHRTLVSWFGDSPSAQLGLHRLVRLGLTMGKQAGDWYGPAVVA
HILKKAVEEAMDPSLAGITAYVSQDCTVYSADVIDSHRAPKPGQASPERSDAPPTPQNNQ
PAPASTLSDSRAVIILIPVRLGGEKTNPDYFNFAKSILSLEYCIGIIGGKPKQACYFVGF
QDDSLIYMDPHYCQSFVDVSTSDFPLQSYHCPSPKKMPFSKMDPSCTIGFYSRSVQDYER
IRHELSKVLQPSAKEKYPAFTFVQGHGRDYDLSASLTPEKREWPFIRDPRRTVTTTGDFV
LL
NT seq 1449 nt   +upstreamnt  +downstreamnt
atggagaataaagggagcgacgaggtggaaaaattgaagacaaagttcttgtcagtgtgg
cacaatgtgaagtacagttgggctctaaaattaaagacctcattcagtagaaattcacct
gtgctcctcctcggaaaatgttaccattttaaggctgaagatgacgacagtccaacagaa
gcctgctatgagccctctgaagaggacttcgtcatggggaatgtggaggctttccgcaag
gattttacatccagagtgtggttcacctacagggaggagatccctcccctgcccggctcc
accctgacctccgactgcggctggggctgcatgctgagggcagggcagatgatgctggct
caggcacttattctgcatttcttgggcagagactggacctggtcgaaggcgctggcactc
cagcctttagacacagagacgtggactaccactgcagccaagcgtctggtggcctctctg
gagtcttccctgcaaagttcccccgggccctccgatcacgaatcaccacccgtgcaacaa
gcccaggcttcggcgtctgcagaggaggctgatgaacatttgaaagagatgtaccaccgc
actctggtatcctggtttggggacagcccctcggctcaattaggcctccacagactggtc
cgcttgggcctgacaatggggaaacaggcaggggactggtatgggcctgctgtggtggca
cacatcctcaagaaagctgtcgaggaagcgatggaccctagcttggcgggtataaccgct
tatgtctcccaggactgcacagtgtacagtgctgatgtcatcgatagccacagggcaccg
aaaccagggcaggcctctcctgagaggtcagatgcccctccaaccccacagaacaaccaa
ccagcacctgcctccaccctgtcagacagccgagctgtcatcatccttatccctgtacgg
ctgggaggggagaagacaaaccctgactattttaactttgctaagagcatactgagtctg
gagtactgcataggcatcatcggagggaagcccaaacaggcctgctactttgtaggattt
caagatgacagcttgatttacatggaccctcattactgtcagtcttttgtggatgtcagc
accagcgatttccctctccagtcatatcattgcccctcaccaaagaagatgcctttcagc
aagatggacccaagctgcaccataggtttctactcgaggagtgttcaagactatgagaga
atcagacacgagctgtccaaggtgctgcagccgtcagcgaaggagaaataccccgcgttc
acttttgtacaaggtcacggcagagattacgacctgtcggccagcctgaccccggagaag
agagaatggcccttcatccgtgacccgcggaggacggtcaccaccaccggggactttgtg
ctgctttga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (12)   
   KEGG ORTHOLOGY (1)   
   RefGene (8)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (1)   
   Pfam (1)   
All databases (22)   

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