KEGG   Lacticaseibacillus paracasei W56: BN194_12160
Entry
BN194_12160       CDS       T02337                                 
Symbol
recQ
Name
(GenBank) Probable ATP-dependent DNA helicase recQ
  KO
K03654  ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
Organism
lcw  Lacticaseibacillus paracasei W56
Pathway
lcw03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:lcw00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    BN194_12160 (recQ)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:lcw03019]
    BN194_12160 (recQ)
   03400 DNA repair and recombination proteins [BR:lcw03400]
    BN194_12160 (recQ)
Enzymes [BR:lcw01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     BN194_12160 (recQ)
Messenger RNA biogenesis [BR:lcw03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     BN194_12160 (recQ)
DNA repair and recombination proteins [BR:lcw03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     Supressor
      BN194_12160 (recQ)
SSDB
Motif
Pfam: RQC DEAD Helicase_C HRDC RecQ_Zn_bind ResIII HHH TadB_TadC_N
Other DBs
NCBI-ProteinID: CCK22163
UniProt: K6PSK0
Position
1197699..1199477
AA seq 592 aa
MIAPQAETILKEKFGYDHFRAGQNQAISRVLAGESTLVVMPTGGGKSLCYQIPAMLLSGL
TLVVSPLIALMKDQVDALNDNGIPAAFINSTLDYQEIADRLDQARSGRIKLLYVAPERFD
TDWFVQRLGSTDISLFAIDEAHCISQWGHDFRPSYLNLANVAAQLPSQPPVIALTATATP
RVAQDICQRLAIPADGMINTGFERSNLSFKVVRDQDEDRYLLDYLKLNVDQAGIIYASTR
KEVDRLYTFLAHKKLPVAKYHAGMSEAQRAANQEDFLFDRKPIMIATNAFGMGIDKSNVR
FVIHAQIPKDVESYYQEAGRAGRDGLPSEAILLFKPQDLQVQRFFIDQSEGDDEHKQRQY
EKLKMMERYANTDQCLQQFILNYFGQSGTKPCGRCSNCLDDRESVDVTVDAQKVLSCVVR
LHERFGKGVVAQVLAGAHNQRVLSFHLDQLSTYGLMSSRRQRDITTFIDFLAAGGYLETR
GGQYPTLGLTAKGAEVLRGQAQVFQKTAQKAEQHLEVDDTVFQELRSTRRQLAEQQHLPP
YMIFSDKTLKAIGSAMPQSLDELMAVKGVGQAKLDKYGQIFLDVLQAIKAKA
NT seq 1779 nt   +upstreamnt  +downstreamnt
atgattgcgccgcaagcggagacaattttaaaggaaaaatttggctatgatcattttcgt
gctggtcaaaatcaggccatcagtcgcgttttggctggtgaaagcacgctggttgtgatg
ccaacaggcggcggaaaatcgttgtgttatcagattccagcgatgttgttgtcgggattg
acgctcgtggtgtcgccgctcatcgcgttgatgaaggatcaggtggatgcgctgaacgat
aacgggattccggcggctttcattaacagcacgctcgattatcaggagattgctgatcgc
cttgatcaagcaagaagtggtcggattaaattgttatatgttgccccagaacggtttgac
acggattggtttgtgcaacggcttggcagcaccgatatttcgttatttgcaattgatgaa
gcccattgtatttcccagtgggggcacgattttcggccgagttatttgaatctggcgaat
gtggcggctcaattgccttcgcagccaccggtcattgccttaactgcgacggccacaccg
cgagttgcgcaggatatttgccagcgactggcgattccggctgacgggatgattaatact
ggttttgagcgaagtaatctgagcttcaaggtcgtacgcgatcaggatgaagatcggtat
ctactagattacctgaaactgaatgtcgatcaggcaggcatcatctatgccagcacccgt
aaagaagttgaccgtttgtatacctttttggcacataagaagttgcctgtggccaaatat
cacgcgggcatgagtgaagcgcagcgtgctgctaatcaggaagattttttgttcgatcgc
aaaccaattatgattgcaacgaatgcgttcggcatgggtattgataaaagcaacgtgcgg
tttgtcattcacgcccagattcccaaagatgtcgaatcgtattatcaagaagccggtcgg
gctggtcgtgatggcttgccgagtgaggcaattttgctgtttaagccgcaagatctccag
gttcagcggttcttcatcgatcaatccgaaggcgatgacgagcacaaacagcggcaatat
gagaagttgaaaatgatggaacggtatgcgaacacagatcagtgtttgcaacagtttatt
ttgaactatttcggtcaaagcgggacaaaaccatgtggtcggtgttcgaattgtttggat
gaccgggaatcggtggatgttacggttgatgcgcagaaggtcttatcttgtgtggttcgc
ttgcatgaacgttttggcaaaggcgttgtggcgcaagtgctggcgggggcccacaatcag
cgggtattgtcgtttcatctagatcaattgtcaacttatgggttgatgagcagtcgtcgt
caacgcgacattacaacgttcatagattttctggcggctggcggttatttggaaactcgc
ggtggtcagtacccaactctgggcttaacggccaaaggcgctgaggttcttcgcggacaa
gcgcaagtattccagaagacggcgcaaaaagccgagcagcatcttgaagtcgacgacact
gtctttcaggaactgcgcagtactcggcgacaactggcggagcagcagcatttaccgcct
tatatgattttctctgataagacgttgaaggcaattggcagcgccatgccgcaaagtctt
gatgagttgatggcggtcaaaggcgtcgggcaggcgaagttggataagtatggccaaatc
tttttggacgtcctgcaggcgattaaggccaaggcttga

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (8)   
   Pfam (8)   
All databases (19)   

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