KEGG   Lacticaseibacillus casei 12A: LCA12A_1566
Entry
LCA12A_1566       CDS       T03665                                 
Name
(GenBank) RecQ family ATP-dependent DNA helicase
  KO
K03654  ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
Organism
lcx  Lacticaseibacillus casei 12A
Pathway
lcx03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:lcx00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    LCA12A_1566
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:lcx03019]
    LCA12A_1566
   03400 DNA repair and recombination proteins [BR:lcx03400]
    LCA12A_1566
Enzymes [BR:lcx01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     LCA12A_1566
Messenger RNA biogenesis [BR:lcx03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     LCA12A_1566
DNA repair and recombination proteins [BR:lcx03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     Supressor
      LCA12A_1566
SSDB
Motif
Pfam: DEAD Helicase_C ResIII RecQ_Zn_bind Virul_Fac
Other DBs
NCBI-ProteinID: EKP99891
Position
1332269..1333678
AA seq 469 aa
MSQLEAQLQQHFGFQEFRPGQKALIQSVLDGHDTLGILPTGSGKSLCYQLPTLISNKPSL
IVEPLIALMNDQVGRLQAAGEKRVIALSAQMPPVAFTQILKRLASYHYIFVSPEILQRAD
VLMALKRLALGLFVVDEAHCISQWGPDFRPAYLQLGQVRQQLQADAILALTATAPEPVRR
DIVQHLSMQSPAILAGSVDRPNIFLGVETGLTEKEKALRLDQLLHEVVGPTIIYSATRAA
CETLAIRLQKAGHAAAFYHAGLDRHQRDLIQRQFQSDQLQIICATSAFGMGIDKANVRFV
VHTYVPESLEAYYQAIGRAGRDGKQSLAALLVTDHDVQHGAILAGMLPDAALIRLIYAHP
EAYRTFDDPQINLIEAYVDAGFSVEATQQQLQHRLTEKQASFAAMAAFVNESECRRAVLL
QHFDSPIEPHTALCCGEITTTILRQLQPEVPQEQPKLASWQAVFHQIFR
NT seq 1410 nt   +upstreamnt  +downstreamnt
gtgtcacaacttgaagcacaacttcaacaacattttggctttcaagaattccgacctgga
caaaaggctttgatccaatcggtgttggatggacatgacacgctgggaattttacctact
ggcagcgggaaatcactctgttatcaattgccgactttgatcagtaacaagccaagttta
attgttgaaccgctcattgccttgatgaatgatcaagttggtcgtttgcaagcagctgga
gaaaaacgggtcattgccttgtcagcgcaaatgccaccggttgcttttacccaaattctc
aaacgattggcaagttaccactatatttttgtctcaccagaaattttacaacgcgctgat
gtgctcatggcgctcaaacgactggccctaggcttatttgtggtagatgaagcgcattgt
atctcacagtgggggccagattttcgacctgcttatttgcagctgggacaagttcgccaa
caattgcaagcagatgcgattcttgccttaaccgcaaccgcaccggagcccgttcgccgt
gacattgtccaacatctaagcatgcaatcgccagcaattttggctgggtcagtcgatcga
ccaaatattttccttggcgttgagaccggcttaacagagaaggaaaaggctttaagactg
gatcagttattgcacgaggtggtggggccaacgatcatttatagtgctacccgagccgcg
tgtgagacgttagcgatacgattgcaaaaagccggccatgctgcggccttttatcatgct
gggttggatcggcaccaacgcgatctaatccagcgacagtttcaatcggatcagttgcag
attatctgtgcgacgagtgcgtttggcatggggatcgataaggcaaatgtacggttcgtc
gtgcatacctatgtgccggaatcgcttgaagcttattatcaggcaatcggacgagccggc
cgtgatggcaagcagagtctagcggcgcttttggtgaccgatcatgatgttcagcacggc
gctattttggcggggatgttgccagatgcggcattgattcggctcatctatgcgcatcct
gaggcgtatcgcacttttgacgatccgcagatcaacctgatcgaagcgtatgtagacgct
ggcttttcggtagaggctacgcagcagcaattacagcacagactaactgagaaacaggct
agtttcgcagcgatggcggcttttgttaatgaatcagaatgccgtcgtgctgttctgctg
caacattttgattcgccaattgaaccgcatacggctttgtgctgtggcgagatcaccact
acgatattgcgccaactacagcctgaagtgccacaagaacaaccaaaattagcttcttgg
caggcagtatttcaccaaatctttagataa

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (5)   
   Pfam (5)   
All databases (15)   

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