KEGG   Lacticaseibacillus casei 12A: LCA12A_1969
Entry
LCA12A_1969       CDS       T03665                                 
Name
(GenBank) DNA-directed RNA polymerase alpha subunit
  KO
K03040  DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
Organism
lcx  Lacticaseibacillus casei 12A
Pathway
lcx03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:lcx00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    LCA12A_1969
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:lcx03021]
    LCA12A_1969
   03400 DNA repair and recombination proteins [BR:lcx03400]
    LCA12A_1969
Enzymes [BR:lcx01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     LCA12A_1969
Transcription machinery [BR:lcx03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     LCA12A_1969
DNA repair and recombination proteins [BR:lcx03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      LCA12A_1969
SSDB
Motif
Pfam: RNA_pol_A_bac RNA_pol_A_CTD RNA_pol_L
Other DBs
NCBI-ProteinID: EKP96762
Position
complement(2427468..2428406)
AA seq 312 aa
MIEFEKPNITKVDESTNYGKFVVEPLERGYGTTLGNSLRRILLSSLPGAAISSIQIDGVL
HEFSTIDGVLEDVTQIILNIKKLALKMNTDEDKNIEIDVNGPAKVTAADIVADPDVEVLN
PEQYICTVADGGHFHVRMTVKKGRGYVAADQNKSDDMPIGVLPIDSIFTPISRVNYQVES
TRVGRRNDFDKLTLDVWTNGSISPREAISLAAKILTEHLDIFVNLTDEAKNAEIMVEKEE
THKEKMLEMTIEELDLSVRSYNCLKRAGINTVQELTNKTEADMMKVRNLGRKSLEEVKNK
LADLGLGLRKED
NT seq 939 nt   +upstreamnt  +downstreamnt
atgatcgaattcgaaaagccgaacattaccaaagttgacgaaagcaccaactatggcaag
tttgtggttgaaccgttggaacgcggctacggtactactttaggtaactcgttgcggcgg
atccttctttcttcattgcctggggcagctatcagcagcatccaaatcgacggggtacta
catgagttctccacgattgacggtgtgctggaagatgtgacccagatcattttgaatatc
aaaaaattggcgctcaaaatgaacactgatgaagacaagaacatcgaaattgatgtcaac
ggtccggctaaggtaactgctgctgatatcgtcgctgatcctgatgttgaggtcttaaat
cctgaacagtatatctgtactgttgcagatggcgggcacttccatgtacgtatgaccgtt
aaaaagggtcgcgggtatgtggcagctgaccaaaacaagtctgatgacatgccaatcggt
gttttgccgatcgactcgattttcaccccgatcagccgggttaactatcaagttgaaagc
acccgtgttggccgtcggaatgatttcgacaagttaacgctggatgtatggactaatggc
tcaatctcaccacgagaagccatcagcttagcagcgaagatcctgacagaacacttggac
atcttcgtcaatttgacggatgaagccaagaacgctgaaatcatggttgaaaaagaagag
actcacaaggaaaagatgcttgagatgactatcgaagagcttgacttgtccgttcgttct
tacaactgcttgaagcgtgctgggatcaacacagttcaggagttaaccaacaaaacagaa
gccgatatgatgaaagtacgtaatttaggtcgtaagtcacttgaagaagttaaaaacaag
ttggcagatctcggcttaggattgcgtaaagaagactaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (3)   
   Pfam (3)   
All databases (13)   

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