KEGG   Lysobacter enzymogenes C3: GLE_3796
Entry
GLE_3796          CDS       T04371                                 
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase, beta' subunit
  KO
K03046  DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
Organism
lez  Lysobacter enzymogenes C3
Pathway
lez03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:lez00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    GLE_3796 (rpoC)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:lez03021]
    GLE_3796 (rpoC)
   03400 DNA repair and recombination proteins [BR:lez03400]
    GLE_3796 (rpoC)
Enzymes [BR:lez01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     GLE_3796 (rpoC)
Transcription machinery [BR:lez03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     GLE_3796 (rpoC)
DNA repair and recombination proteins [BR:lez03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      GLE_3796 (rpoC)
SSDB
Motif
Pfam: RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4 Apocytochr_F_C
Other DBs
NCBI-ProteinID: ALN59140
UniProt: A0A0S2DKT2
Position
complement(4282044..4286267)
AA seq 1407 aa
MKDLLNLFNQQRPALDFDAIKIALASPDLVRSWSFGEVKKPETINYRTFKPERDGLFCAA
IFGPIKDYECLCGKYKRMKHRGVVCEKCGTEVTLAKVRRERMGHIDLASPVAHIWFLKSL
PSRIGLMLDMTLRDIERILYFEAYVVTEPGLTPMERGNLLTEEQYLQARQEHGDDFEAAM
GAEAVYDLLRTIDLQAEMLQLKEEIASTNSETKLKRLTKRIKLVEAFLESGNRPEWMVMT
VLPVLPPDLRPLVPLEGGRFATSDLNDLYRRVINRNNRLRRLLELNAPDIIVRNEKRMLQ
ESVDALMDNGRRGRAITGTNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVIVVGPT
LRLHECGLPKKMALELFKPFIFAKLQRRGLATTIKAAKKLVEREEAEVWDILEEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCTAFNADFDGDQMAVHVPLSLEAQLEA
RALMMASNNILSPANGEPIIVPSQDVVLGLYYMTRALENKAGEGMAFANVAEVKRAYDNR
AVQLHAKVKVRITETVIAEDGTRSQKTSVVDTTVGRALLREILPEGLPYALANTELTKKN
ISRLINSCYRMLGLKDTVVFADRLMYTGFGYATRAGVSIGIDDMIIPGEKKGILAEAESE
VLEIQQQYQSGLVTAGERYNKVVDIWSRTNERVAKAMMDAIGTDTVTNAKGDQVPQKSMN
SIYIMADSGARGSQAQIRQLAGMRGLMARPDGSIIETPITANFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDVVITETDCGTVEGLTMTPIVEGGDVVEPLRDRVL
GRVVAEDVFLPGNDEEPIVTRNTLLDEAWVQKLEDASVQSIKVRSTITCASSFGVCARCY
GRDLGRGHLVNHGEAVGVVAAQSIGEPGTQLTMRTFHIGGAASRAAAIDNVTVKTTGSLK
FNNLKHVAHAGGHLVAVSRSGELSVLDPHGRERERYKVPYGATINFRDGAEIKAGNTVAN
WDPHNHPIVSEVAGFVRFIDFVDGVTVIEKTDDLTGLASREITDPKRRGSQGKDLRPIVR
IVDKNGKDLSIPGTDLPAQYLLPPRSIVNLQDGAPVGVGDVVAKIPQEASKTRDITGGLP
RVADLFEARKPKDPAVLAEVSGIVSFGKDTKGKQRLIIKQADGEEHEELIPKYRQIIVFE
GEHVEKGETVVDGEPSPQDILRLLGVEPLAVYLTKEIQDVYRLQGVKINDKHIEVIVRQM
LRKVEIVDGGDSKFLNGEQVERQRLIEENVRLQARSEILAKFDPVLLGITKASLATESFI
SAASFQETTRVLTEAAVRGTRDSLRGLKENVIVGRLIPAGTGLAYHTQRRKNASGLTDSE
MEALAGPVSVAVEAPAAAETVAGDDAE
NT seq 4224 nt   +upstreamnt  +downstreamnt
atgaaagacttgctcaatctcttcaaccagcagcgtcccgcgctggacttcgacgccatc
aagatcgccctggcctccccggacctggtgcgctcgtggtcgttcggcgaagtgaagaag
ccggaaaccatcaactaccgcaccttcaagcccgagcgcgacggcctgttctgcgccgcg
atcttcggtccgatcaaggactacgagtgcctgtgcggcaagtacaagcgcatgaagcac
cgcggcgtggtgtgcgagaagtgcggcaccgaggtcaccctggccaaggtccgccgcgag
cgcatgggccacatcgacctggcctcgccggtcgcgcacatctggttcctcaagtcgctg
ccctcgcgcatcggcctgatgctggacatgaccctgcgcgacatcgagcgcatcctgtac
ttcgaagcgtacgtcgtgaccgagccgggcctgaccccgatggaacgcggcaacctgctg
accgaagagcagtacctgcaggcgcgccaggagcacggcgacgacttcgaggccgcgatg
ggcgccgaggcggtctacgacctgctgcgcaccatcgacctgcaggccgagatgctgcag
ctgaaggaagagatcgcctcgaccaacagcgagaccaagctcaagcgcctgaccaagcgg
atcaagctggtcgaagccttcctcgaatccggcaaccgtccggagtggatggtcatgacc
gtgctgccggtgctgccgccggacctgcgtccgctggtgccgctggaaggcggccgcttc
gcgacctcggatctgaacgatctgtaccgccgcgtcatcaaccgcaacaaccgcctgcgc
cgcctgctcgaactcaacgcgcccgacatcatcgtgcgcaacgagaagcgcatgctgcag
gaatcggtcgacgccctgatggacaacggccgccgcggccgcgccatcaccggcaccaac
aagcgcccgctcaagtcgctggccgacatgatcaagggcaagcagggccggttccgccag
aacctgctcggcaagcgcgtggactactcgggccgttcggtcatcgtggtcggcccgacc
ctgcgcctgcacgagtgcggcctgccgaagaagatggcgctggagctgttcaagcccttc
atcttcgccaagctgcagcgccgcggtctcgccaccacgatcaaggccgccaagaagctg
gtcgagcgcgaagaggccgaggtgtgggacatcctcgaagaggtgatccgcgagcacccg
gtgctgctgaaccgcgccccgaccctgcaccgcctcggcatccaggcgttcgagccggtg
ctgatcgaaggcaaggcgatccagctgcacccgctggtctgcaccgcgttcaacgccgac
ttcgacggcgaccagatggccgtgcacgtcccgctgagcctcgaggcccagctggaagcg
cgcgcgctgatgatggcgtcgaacaacatcctgtcgccggccaacggcgagccgatcatc
gtgccgtcgcaggacgtcgtgctcggcctgtactacatgacccgcgccctggagaacaag
gcgggcgagggcatggcgttcgccaacgtggccgaggtcaagcgcgcctacgacaaccgc
gccgtgcagctgcacgccaaggtcaaggtccgcatcaccgagaccgtgatcgccgaggac
ggcacccgttcgcagaagacctcggtggtcgacaccaccgtcggccgcgccctgctgcgc
gagatcctgccggaaggcctgccgtacgcgctggccaacaccgagctgaccaagaagaac
atcagccgcctgatcaactcctgctaccgcatgctggggctgaaggacaccgtcgtgttc
gccgaccgcctgatgtacaccggcttcggttacgcgacccgcgccggcgtgtcgatcggc
atcgacgacatgatcatcccgggcgagaagaagggcatcctggccgaggccgagtcggaa
gtgctggaaatccagcagcagtaccagtccggcctggtcaccgcgggcgagcgctacaac
aaggtcgtcgacatctggtcgcgcaccaacgagcgcgtggccaaggcgatgatggacgcg
atcggcaccgacaccgtgaccaacgccaagggcgaccaggtcccgcagaagtcgatgaac
tcgatctacatcatggccgactccggcgcgcgcggttcgcaggcgcagatccgtcagctc
gccggcatgcgcggcctgatggcgcgtccggacggctcgatcatcgagacgccgatcacc
gcgaacttccgcgaaggcctcaacgttctgcagtacttcatctcgacccacggcgcccgt
aagggcctggcggataccgcgctgaagaccgcgaactcgggttacctgacccgccgtctg
gtcgacgtggcgcaggacgtggtcatcaccgaaaccgactgcggcaccgtcgagggtctg
accatgaccccgatcgtcgaaggcggcgacgtggtcgagccgctgcgcgaccgcgtgctg
ggccgcgtcgtggccgaggacgtgttcctgccgggcaacgacgaggaaccgatcgtcacc
cgcaacaccctgctcgacgaagcctgggtgcagaagctcgaggacgccagcgtccagtcg
atcaaggtgcgttcgaccatcacctgcgccagcagcttcggcgtgtgcgcgcgctgctac
ggccgcgacctcggccgcggccacctggtcaaccacggcgaagcggtcggcgtcgtcgcc
gcgcagtcgatcggcgagccgggcacgcagctgaccatgcgtaccttccacatcggcggc
gcggcgtcgcgagcggcggcgatcgacaacgtcaccgtcaagaccaccggttcgctgaag
ttcaacaacctcaagcacgtcgcgcacgccggcggccacctggtcgcggtgtcgcgttcg
ggcgaactgtcggtgctcgacccgcacggccgcgagcgcgagcgctacaaggtgccctac
ggcgcgaccatcaacttccgcgacggcgccgagatcaaggccggcaacacggtcgcgaac
tgggatccgcacaaccacccgatcgtttcggaagtcgccggtttcgtgcgcttcatcgac
ttcgtcgatggcgtgaccgtgatcgagaagaccgacgacctgaccggcctggcctcgcgc
gagatcaccgatcccaagcgtcgcggctcgcagggcaaggacctgcgtccgatcgtgcgc
atcgtcgacaagaacggcaaggacctgtcgatcccgggtaccgacctgccggcgcagtac
ctgctgccgccgcgctcgatcgtcaacctgcaggacggcgcgccggtcggcgtcggcgac
gtggtcgccaagatcccgcaggaagcgtcgaagacccgcgacatcaccggcggtctgccg
cgcgtggccgacctgttcgaagcccgcaagcccaaggacccggcggtcctggccgaggtc
tccggcatcgtcagcttcggcaaggacaccaagggcaagcagcgcttgatcatcaagcag
gccgacggcgaggagcacgaagaactgatcccgaagtaccgccagatcatcgtgttcgaa
ggcgagcacgtggagaagggcgagacggtcgtggacggcgagccgagcccgcaggacatc
ctgcgcctgctgggcgtggagccgctggcggtctacctgaccaaggaaatccaggacgtc
taccgcctgcagggcgtgaagatcaacgacaagcacatcgaggtgatcgttcgccagatg
ctgcgcaaggtcgagatcgtcgacggcggcgacagcaagttcctcaacggcgagcaggtc
gagcgtcagcgcctgatcgaggagaacgtgcgcctgcaggcccgcagcgagatcctggcc
aagttcgatccggtcctgctcggcatcaccaaggcctcgctggcgaccgagtcgttcatc
tcggcggcctcgttccaggagaccacccgcgtgctgaccgaggccgccgtgcgcggtacc
cgcgacagcctgcgcggcctcaaggagaacgtgatcgtcggtcgcctgatcccggccggt
accggcctggcgtaccacacccagcgccgcaagaacgcgtcgggcctgaccgactcggag
atggaagcgctggccggtccggtgagcgtggcggtcgaggctccggccgcggccgagacg
gtcgccggcgacgacgccgagtaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (6)   
   Pfam (6)   
All databases (17)   

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