KEGG   Leptospirillum ferrooxidans: LFE_2345
Entry
LFE_2345          CDS       T01809                                 
Name
(GenBank) putative transcriptionrepair coupling factor
  KO
K03723  transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
Organism
lfc  Leptospirillum ferrooxidans
Pathway
lfc03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:lfc00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    LFE_2345
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:lfc03400]
    LFE_2345
Enzymes [BR:lfc01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     LFE_2345
DNA repair and recombination proteins [BR:lfc03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     TRCF (transcription-repair coupling factor)
      LFE_2345
SSDB
Motif
Pfam: DEAD Helicase_C UvrB_inter TRCF CarD_TRCF_RID ResIII UB2H RecG_dom3_C DUF3638
Other DBs
NCBI-ProteinID: BAM08017
UniProt: I0IRW8
Position
2419219..2422584
AA seq 1121 aa
MTRGDEISLAGIPPEASFLLPGLILDQIPDRTLWILTANMERARSLYNDINSFNALFPEA
PDGLLLPEEEILPYEEESPPDLLRAERISVLSELSRRPVSFVVSTFPAIARKTLPKRLLS
GGLSEITLGTLVDRQELIQSLVALGFFRVPQVTAPGEFSVRGAILDLYTPSRPEPVRLEF
TDDELTSMRGFDPNTQRSMGSIEKLDLAPSHEWLPPINRSHFSEELKDFLSVHQATPLAP
GIERYIGQFYDDITSPLDYTPDPVLFIEDPHALEIRINDWQERIRDAYESIPAEERALLP
PPEKAFIPFGAREKTPFSFGSDHPRILLSVFRDDPDAPDLFSPPEKLIDRNESWILRLRE
LSSRMRVITFFGSRGQRDRFQEILENQAIPFTPLSELQEENPPPEGSIQTILGDIGEGIY
IAPDNTLLVSDTFLFRKKYDRTRETRFRTAAAAFRRDQIRLAEGEPVVHLQQGIGIYRGL
REIEVGNIPGEFLIVEYRDGDKLYVPVDQVDLLKPWRGPEGSPPKLDRLGGHSWQKTRSR
VRKEIEKISQELVDLYAKRKALPGFPFSQDSVMISEFENAFPHDLTPDQEEATRDIREDM
ESPTPMDRLVLGEVGFGKTEVAMRAAFKAVADGKQVAVLVPTTLLCLQHFETFKERFSGF
PVRVEQISRILTAKEQRLLRQDLSEGKIDIMIGTSALLGAQNIFRDLGLLIIDEEQRFGV
GHKEKLKNKYPTVDVLTLSATPIPRTLQMSLSGLRGISFIMTPPPGRKPIKTAILPFDRH
RIREAIDRELARDGQVFFIHNRVSSISRMAHYISSLFPGVPVGVAHGQMDSQLMETIMDR
FISGHYRILVSTAIVESGLDIPQANTIIINRSDLFGIAELYQLRGRVGRSGTQAYCYFLV
AGEGGLTELAKKRLKTLQDNTELGSGYQIAMRDLEIRGAGSLLGHQQTGHISMVGLDLYM
EMVEEAIQTRVEPVAIPVVRETPRIDLGREARLPEDYVVHPGLRIDFYRRLAHSFKDLEI
DQIESELRDRFGPLPRSARALILGAKIRVMTTRMGISEVRLKDREIFLKPSAEKALSPRN
AGKIAQAFPDRITFHRDGSFTLSGPASGFPDDLARLEELLS
NT seq 3366 nt   +upstreamnt  +downstreamnt
ttgacccggggagatgaaatctcccttgccggaattccccccgaggcctcctttctgctc
ccgggtcttattctcgatcagatccccgacagaacgctctggattctgacggccaacatg
gaacgggcgcgatccctctacaatgacatcaacagcttcaatgccctttttccggaagcc
ccggatgggcttcttctccccgaagaagagattcttccttatgaggaagagagccctccc
gaccttctgagagccgaaagaatctcggtattatccgagctctcaagacgaccggtctcc
ttcgtcgtttcaacctttcctgccatcgccagaaaaacgttacccaaaagacttctgtca
gggggactttccgaaatcaccctgggaacacttgttgaccggcaggaactcatccaatcc
ctggtcgccctcggatttttcagggttccacaggtcactgccccgggagagttttcggtg
agaggtgccatccttgatctttatacaccttcaaggcctgaaccggtcagactcgaattt
acggacgatgagctgacctccatgagaggatttgatcccaatacccaacgatccatgggg
tccatcgaaaaactggatcttgctcctagccatgaatggctgccgcccataaaccgaagc
catttttctgaagaactgaaggacttcctttcagtccaccaggccaccccgctggccccc
ggaatcgagcggtacatcggacagttctacgacgatatcaccagcccgctggactacacc
cccgatcctgtactcttcatcgaagatccccatgccctcgaaatccggatcaatgactgg
caggagaggattcgcgatgcatacgaatccattccggcggaagagcgggcattgctccct
ccgcctgaaaaggccttcattccattcggagccagagaaaaaacccctttttcctttggc
tccgaccatccaaggatcctcttgtctgtcttccgcgatgaccccgatgcgcccgatctc
ttttctcctccggaaaaactgatcgacaggaatgaatcatggatcttgaggctccgggaa
ctctcctcccggatgagggtcatcaccttttttggcagccgtgggcaacgggatcgcttc
caggaaatccttgaaaaccaggccattccttttacgcccctttcagagctccaggaagag
aatcctcctccggaaggatcgatccaaacgatcctcggagatatcggagaaggaatctac
atcgcgccagataacactcttctggtttccgacaccttcctgttccgaaaaaaatatgac
cgcaccagagaaactcgcttccggacagctgcggcggccttccggagggaccagatcaga
cttgccgaaggggaaccggttgtccatctacagcaggggattggtatctatcgggggctt
agagaaatcgaagtggggaacattcccggcgaattcctgattgtcgaataccgtgacgga
gacaagctctatgttccggtcgaccaggtcgatcttctgaaaccctggaggggaccagaa
ggatctccccccaaactcgaccgtcttggtggccattcctggcaaaaaacccgatcgagg
gtacggaaggaaatcgagaaaatctcccaggaactggtcgatctctatgccaaaaggaaa
gcacttccgggatttcccttctcccaggattcggtcatgatctcagaatttgaaaatgct
tttccccatgacctgaccccagaccaggaagaagccacccgggatatccgcgaagacatg
gaatcccccactcctatggaccggctggttcttggagaggtggggtttggaaaaaccgaa
gtcgccatgagagcggccttcaaggccgtcgccgatgggaaacaggttgcggtgctggtt
ccgacgacccttctttgccttcagcattttgaaacattcaaggaacgcttttccggattt
ccagtgagggtcgaacagatttccaggatcctgactgccaaggaacaaagactcctccgg
caggatctttcggaggggaagatcgacattatgatcggaacatccgccctcctgggcgcc
cagaacatcttccgggacctgggactcctgatcattgacgaagagcaaagattcggtgtc
ggacacaaggaaaaactcaaaaacaaatacccgactgtcgatgtcctgactctgtcggcg
acaccgattccccgaacactgcagatgtccctttcgggtcttcgaggaatcagcttcatc
atgacccctcctcccggtcgaaagccgatcaagaccgccattctgccattcgaccgccat
cgtatcagggaagccatcgaccgggaacttgcacgggatggtcaagtcttttttatccac
aaccgcgtcagctcgatctcccgcatggctcactatatttcaagcctctttccgggggtt
ccggtcggagtcgcccatgggcagatggatagccagctcatggagaccatcatggaccga
tttatctcgggtcattatcgtatcctcgtctcaacggcgatcgtggagtccggtctcgac
attccccaggccaacaccatcatcatcaaccgctcggacctttttggaatcgcggaactc
tatcagctccggggaagggtcggacgatccggaacgcaggcctattgttacttccttgtc
gccggagaaggcggtctgaccgagcttgcaaaaaaacggctgaaaacgcttcaggacaac
acagagctgggatccggttaccagatcgccatgagagatctggaaattcgcggagcagga
agccttctcggccatcagcaaaccggacatatctccatggtgggacttgacctctacatg
gagatggtcgaggaagccattcaaacccgggttgagcctgtcgcgattcccgttgtccgg
gaaacacccagaatcgatcttggaagagaagcccgtctcccggaagattatgtcgttcac
cccggattgcgaattgacttttacaggcgtctggcacattctttcaaggatttggagatc
gatcagatcgaatcggagctcagggaccgctttgggcccttgccaagatcggccagggca
ttgatccttggggcaaaaatccgggtcatgaccacccgaatgggaatctcggaagttcgt
ctcaaagacagggaaatctttctcaagccttcagcagaaaaagctctctccccccgtaat
gcgggaaagatcgcccaggcgttccccgaccggatcacctttcaccgggacggatccttt
acactttcgggaccggcttccggatttccggatgatctggccagacttgaagaacttctt
tcgtaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (21)   
   KEGG ORTHOLOGY (1)   
   RefGene (18)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (9)   
   Pfam (9)   
All databases (37)   

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