KEGG   Leuconostoc garlicum: A9176_08290
Entry
A9176_08290       CDS       T04802                                 
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
  KO
K07462  single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
lgc  Leuconostoc garlicum
Pathway
lgc03410  Base excision repair
lgc03430  Mismatch repair
lgc03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:lgc00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    A9176_08290
   03430 Mismatch repair
    A9176_08290
   03440 Homologous recombination
    A9176_08290
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:lgc03400]
    A9176_08290
DNA repair and recombination proteins [BR:lgc03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    RecJ
     A9176_08290
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    RecFOR pathway proteins
     A9176_08290
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      A9176_08290
SSDB
Motif
Pfam: DHH RecJ_OB ssDNA-exonuc_C DHHA1
Other DBs
NCBI-ProteinID: AQN80344
Position
complement(1646737..1648698)
AA seq 653 aa
MSQNNWRLLPQPTEKTVRQLTSQLNIAQLTATIVAQKGYTTPEAAFAYLQPSIDQLHDPM
QLHDLDKALERLMTAAFEGEKIVVYGDYDLDGVTSTAVMLEALQVLGADVTAYIPNRFQD
GYGPNLAAYQRLIADGAQVIVTVDNGVSGHEAVAYAMSQGVDVIITDHHEMGPTLPDAYA
IVHPRHPEGDYPFTDLSGVGVAFKLAQALLTDGEPVQDKSELPTEMLDLVALGEIADMVS
LTDENRTLVSWGLKQMAESPRPGIAALLKSAGQLSDQPIISETVGFKLAPRLNAVGRLGD
AQLALDLLLTQSSDEATALATQVEAINAQRQEIVEEVFGAAKQLALSDAHANDQVLVVAG
DDWHQGILGIVASRLVELIHKPVIVLSLVDGTYKGSGRTYGDFDLYALMGQYRDLYDTFG
GHASALGLGISPANLAILRERLSSLPALVIPEKQVAVNMMLPVNQLAPTLYDALKLMEPF
GKDNPEPVFGFQTPKIEKAMTMGATQQHVKLTLANQIEAVGFNHPDWTRIVQQPAGVSFA
ATLGLNYFRGQAKLQLLLADVALPEPVENTAHKQFFAQVYKFIYAHQDLNFGQNLAKIAK
QLQLSPKDLNIMIQVFIELGFVRIVDGYVKIIPNAPQKSLTTSVTYQKFLANR
NT seq 1962 nt   +upstreamnt  +downstreamnt
atgagtcaaaacaattggcgtttgctgccccaaccaacggaaaaaacagtccgccagctc
acgtcacaactaaatattgcccaattgacggccacgattgtggcgcaaaaaggctacacg
acacccgaagcggcgtttgcttatctccaaccaagcattgatcaactgcatgatccaatg
cagctccatgatttggataaagcgttggaacggttgatgacagccgcttttgaaggcgaa
aaaatcgtcgtctatggtgattacgatttagatggggtgaccagtacagcggtaatgctt
gaagctttacaagtgcttggtgccgacgtgactgcctatattcctaatcgtttccaagac
ggctacgggccaaacttagcagcataccaacgtttgattgcagatggtgcgcaagtcatt
gtgacggttgataatggggtgagtggccacgaagcggtggcttatgccatgagtcaaggc
gtggatgtcattatcaccgaccaccatgaaatgggaccaacgttaccggatgcctacgcc
attgtccatccaagacatcccgaaggcgactatccatttactgatttatcaggagtcggg
gtcgcatttaaactggcccaagcgctattaactgacggggaaccggtacaagataaaagc
gaattgcccacggagatgcttgatttggtggcgttaggcgaaattgccgatatggtatca
ctgacggatgaaaatcgaacgttggtttcttgggggctcaagcaaatggcggaaagtcct
cggccaggaattgccgccttattaaaaagtgcaggtcagctatccgaccaaccgattatt
tccgaaacggttggctttaagctggcgccacggttgaatgctgttggtcggttgggggat
gcgcagttagcattggatttgctactgacgcagtcatccgatgaggcaacggcactagca
acgcaagtggaagcgattaacgcccaacgtcaagaaattgttgaagaagtttttggtgcg
gccaagcaattggcgttgtcagacgcccatgccaacgatcaagttttagtggtggctggt
gatgattggcatcaaggtattttgggaattgtggcaagtcgactcgttgagttgattcac
aaaccagtgattgtcttgagtctagtcgatgggacgtataaaggttctggtcgaacgtat
ggtgattttgatctgtacgcgctcatgggtcaatatcgtgatttgtatgacacgtttggt
ggtcatgccagtgcgcttggcttaggtatttccccagcaaacttagctattctgcgggag
cggttatcaagtttgccagccttagtgatacctgaaaaacaagtcgcagtgaacatgatg
ttacccgttaaccaactggcgccaacgctttatgatgcgttaaagttaatggagcctttt
gggaaggacaatccggaaccagtctttggtttccaaacgcctaaaattgaaaaagccatg
acaatgggggcaacccaacaacatgtcaagttaacgctagcaaatcaaattgaagcggtt
ggctttaatcatccagattggacgcgcattgtgcaacaaccggctggggtatcatttgcc
gccactttgggcttgaattacttccgtgggcaagcgaagttgcagttgttattagcagat
gtggccttaccagaaccagtggaaaacacggcgcataagcaattttttgcgcaggtttat
aagtttatttatgctcatcaagacttaaactttgggcagaacttggcaaaaatcgctaag
caactccaactcagtcccaaagacctcaatattatgattcaagtctttattgagctggga
tttgtccggattgtggacggctatgttaaaattattccaaatgccccacaaaagtcattg
acgacatcagtgacctatcaaaaatttttggctaatcgttaa

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (3)   
   KEGG PATHWAY (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (4)   
   Pfam (4)   
All databases (13)   

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