KEGG   Lottia gigantea (owl limpet): LOTGIDRAFT_132099
Entry
LOTGIDRAFT_132099 CDS       T03273                                 
Name
(RefSeq) hypothetical protein
  KO
K03017  DNA-directed RNA polymerase II subunit RPB9
Organism
lgi  Lottia gigantea (owl limpet)
Pathway
lgi03020  RNA polymerase
lgi03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:lgi00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    LOTGIDRAFT_132099
  09124 Replication and repair
   03420 Nucleotide excision repair
    LOTGIDRAFT_132099
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:lgi03021]
    LOTGIDRAFT_132099
   03400 DNA repair and recombination proteins [BR:lgi03400]
    LOTGIDRAFT_132099
Transcription machinery [BR:lgi03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol II specific subunits
     LOTGIDRAFT_132099
DNA repair and recombination proteins [BR:lgi03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      LOTGIDRAFT_132099
SSDB
Motif
Pfam: RNA_POL_M_15KD TFIIS_C Zn_ribbon_recom DUF3716 DZR Ogr_Delta
Other DBs
NCBI-GeneID: 20233268
NCBI-ProteinID: XP_009064851
JGI: 132099
UniProt: V3ZPP9
Position
Unknown
AA seq 125 aa
MYEQHDSGPGFIGIRFCKECNNMLYPKEDKDSKILLYACRNCDYQQEAENRCIYVNKIMH
EVDELTQIVGDVIADPTLPRTEDHHCPKCSHKEAVFFQSHSSKAEEGMRLYYVCGNSQCL
HRWTE
NT seq 378 nt   +upstreamnt  +downstreamnt
atgtatgaacaacatgattctggacctggttttattggaatcaggttctgtaaagaatgc
aataacatgttgtatcctaaagaagataaagacagtaaaatattgttatatgcttgtaga
aattgtgactatcaacaagaagctgaaaatagatgtatttatgttaataaaattatgcat
gaagtagatgaattaacacagattgttggtgatgttatagctgatcctactttaccacgt
acagaagaccatcattgtcctaaatgttcacataaagaagctgtattctttcaatcacac
agctcaaaagctgaagaaggaatgagattgtattatgtttgtggtaattcacaatgttta
catcggtggacagaatga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (25)   
   KEGG ORTHOLOGY (1)   
   RefGene (20)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   JGI (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (6)   
   Pfam (6)   
All databases (40)   

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