KEGG   Lottia gigantea (owl limpet): LOTGIDRAFT_201648
Entry
LOTGIDRAFT_201648 CDS       T03273                                 
Name
(RefSeq) hypothetical protein
  KO
K14415  tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:6.5.1.8]
Organism
lgi  Lottia gigantea (owl limpet)
Brite
KEGG Orthology (KO) [BR:lgi00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03016 Transfer RNA biogenesis [BR:lgi03016]
    LOTGIDRAFT_201648
Enzymes [BR:lgi01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.8  3'-phosphate/5'-hydroxy nucleic acid ligase
     LOTGIDRAFT_201648
Transfer RNA biogenesis [BR:lgi03016]
 Eukaryotic type
  tRNA spricing factors
   tRNA splicing ligase complex
    LOTGIDRAFT_201648
 Prokaryotic type
   tRNA splicing ligases
    LOTGIDRAFT_201648
SSDB
Motif
Pfam: RtcB ACP_syn_III_C
Other DBs
NCBI-GeneID: 20245479
NCBI-ProteinID: XP_009050812
JGI: 201648
UniProt: V4AY40
Position
Unknown
AA seq 504 aa
MRTYQDELKYLEKMTPNCWKIKKGFVENMKVDGCFYVNEHLEKLMFDELKHSIGNKGMGG
FLPGMKQIANVASLPGIVGSSIGLPDCHAGYGFAIGNMAAFDMADPNSVVSPGGVGFDIN
CGVRLLRTNLHLTDVLPLQEQITQCMFDHIPVGVGSKGIIPMNAKNLEEALEMGMDWSLR
EGYAWAEDKEHCEEYGRMLQADPSKVSSRAKKRGLPQLGTLGAGNHYAEIQVVEEIYDQY
AAKKMGIEFKDQVCVMIHSGSRGMGHQVATDALVAMEKAMKRDKINVNDRQLACAHINSV
EGQDYLKGMAAAANYAWVNRTSMTFLTRQAMAKMFQTTPDDLDMHVIYDVSHNIAKVEEH
FVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEQGMVE
TFGTTCHGAGRALSRAKSRRNLDYNNVLQALDDKGISIRVASPKLVMEEAPESYKNVTDV
VDTCHAAGISKKCLKLRPIGVIKG
NT seq 1515 nt   +upstreamnt  +downstreamnt
atgagaacttatcaagatgagttgaaatatcttgaaaagatgactccaaattgctggaaa
atcaagaaaggatttgttgaaaatatgaaagttgatggatgtttctatgtcaatgagcat
ttggaaaaacttatgtttgatgagctgaaacattcgattggaaataaaggaatgggtggg
tttttgccaggaatgaagcaaatagccaatgttgcatcattgccaggaattgttggaagc
tctataggacttccagactgtcatgctggatatggttttgccattggaaacatggcagcg
tttgacatggctgaccctaactcagttgtatcacctggtggtgtgggatttgacataaac
tgtggagttcgtctcctcagaactaatctccatcttacagatgtcctacctctccaagaa
caaataactcaatgtatgtttgatcatatcccggttggtgtgggttccaaaggaatcatc
ccaatgaatgccaagaatttagaagaagctctggaaatgggcatggattggagtttaaga
gaaggttatgcctgggctgaggacaaggagcattgtgaagaatatggaaggatgttgcag
gcagacccttcaaaagtaagcagcagagctaagaaacgaggtcttcctcagctgggaaca
ttaggtgcaggaaatcattatgcagaaattcaggttgtagaggagatctatgatcagtat
gctgcaaaaaagatgggaattgaattcaaagatcaagtttgtgttatgatacatagtgga
agtcgtgggatgggacatcaggttgcaacagatgccttagtggctatggaaaaagccatg
aaaagagacaaaatcaatgtaaacgatcgacaacttgcttgtgctcatatcaactctgtt
gaagggcaggattatttgaaagggatggctgctgcagctaattatgcctgggtcaatcga
actagtatgacatttttaacacgtcaagccatggctaagatgtttcaaaccacccctgat
gatctggatatgcatgtcatttatgatgtgtcacataacatagcaaaagtagaagaacat
tttgttgatgggaagcagaaaaccttgttagtacatcgtaaaggatcaaccagagctttc
cctccacatcatcctcttatccctgttgattaccaactgactggtcaacctgttcttatc
ggtgggaccatgggtacctgcagttatgttcttactggtactgaacaaggcatggttgaa
acatttggaacaacctgtcatggtgcaggtcgtgctttatctcgagccaaatcacgaaga
aatttggactataataacgttctacaagcactggatgacaagggaattagtattcgtgta
gcatcacctaaacttgttatggaagaggcacctgaatcttataaaaatgtgactgatgta
gttgatacttgccatgcagcaggaatcagtaaaaaatgtctgaaacttagacctattggt
gtcatcaaaggctaa

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Ontology (3)   
   KEGG BRITE (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (38)   
   KEGG ORTHOLOGY (1)   
   RefGene (33)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   JGI (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (2)   
   Pfam (2)   
All databases (48)   

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