KEGG   Companilactobacillus ginsenosidimutans: ABM34_01935
Entry
ABM34_01935       CDS       T03990                                 
Name
(GenBank) ribonuclease J
  KO
K12574  ribonuclease J [EC:3.1.-.-]
Organism
lgn  Companilactobacillus ginsenosidimutans
Pathway
lgn03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:lgn00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    ABM34_01935
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:lgn03019]
    ABM34_01935
Messenger RNA biogenesis [BR:lgn03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     ABM34_01935
SSDB
Motif
Pfam: RNase_J_C Lactamase_B RMMBL Lactamase_B_2 DUF4453 SIS_2
Other DBs
NCBI-ProteinID: AKP66430
UniProt: A0A0H4QY98
Position
complement(343919..345610)
AA seq 563 aa
MTQNVKNNEVSVFAIGGLGEIGKNMYGVEYQDELIVIDAGIKFPEDELLGIDYVISDYSY
LVEHQDKIKGLFITHGHEDHIGGIPYLLQKLPNIPVYAGPLACALIKGKLEEHGLLQSTN
LNVLSEDSVIKFPKTSVTFFRTTHSIPDTLGVAVHTPEGIIVETGDFKFDLTPVAGLPAP
NLQRMASLGQEGVLLLMSDSTNAEIPTFSKSERSVGLTIHQIFETIQGRIIFATFASNIY
RVSQAVDAAIQQHRKIAVFGRSMESAIENGRELGYLNIPDEMLMDPHELNHTPANETLIL
CTGSQGEPLAALSRIANGTHRQISIQPGDTVIFSSNPIPGNTISVNHLINQLSEAGAEVI
HGKINNIHASGHGGQTEQELMLRLMKPKFFMPIHGEYRMLKIHTELAELCGVPQENSFLM
ENGDVLALTKDSAHRAGHFPAGDVYVDGKGVGDIGNVVIHDRQLLSEEGMVVVVATIDYK
KHIVLAGPDILSRGFVYMRESGELINQAQKRVFHLIKNAFDDEENKVTEAQLKRVIIDGL
QDFLYKRTARNPVILPMLISTSI
NT seq 1692 nt   +upstreamnt  +downstreamnt
atgactcaaaacgttaagaataatgaagtttccgtttttgccatcgggggccttggcgag
atcggtaaaaacatgtacggagttgaataccaggatgagttaattgtcatcgatgctggt
attaagttccctgaagacgaacttctaggaattgactacgtcatttctgactatagttac
ttagtcgaacatcaagataaaatcaagggtcttttcatcacccatggtcacgaagaccac
attggtggtatcccttatttattacaaaaactacctaatattcctgtttatgctggaccc
ttagcatgtgcattgataaaaggaaagcttgaagaacatggcttactacaatcaactaat
ttgaatgtattaagtgaagattcagtaatcaaatttcctaaaacaagcgttacattcttc
agaacaactcactcaattcccgatacattaggtgtggcagtccatacacctgaaggaata
attgttgagactggagactttaagtttgatttgacacctgttgcaggcttgccagcacca
aacttacaaagaatggcatcacttggacaagaaggagtacttcttctcatgtctgatagt
actaatgctgagattcccactttttctaagtcagaacgttcagttggtttaacgattcat
caaatctttgaaactattcaaggaagaatcattttcgctactttcgcttcaaatatttat
cgtgtttctcaagctgttgatgctgctatccaacaacacagaaaaattgctgtgttcgga
cgaagcatggagtcagcaatcgaaaacggtcgtgaattaggatatctaaatataccggat
gaaatgctcatggaccctcatgaactaaaccacacaccagcaaacgaaacattgattcta
tgtactggttctcaaggtgaaccattggctgcattaagtcgtattgctaatgggacacat
agacaaattagtattcaacctggcgatactgttattttctcaagtaaccctattcctggt
aatacgatcagtgttaaccacttgattaaccaactttctgaagctggtgcagaagttatt
catggtaagatcaacaacatccatgcttctggacatggtggtcaaactgaacaagaatta
atgttacgattaatgaagcctaagttcttcatgccaattcacggtgagtatcgtatgtta
aaaattcataccgaacttgcagaattgtgtggagttcctcaagaaaattcgttcttgatg
gagaacggtgatgtacttgcactaaccaaagattcagctcacagagctggccacttccct
gccggagatgtttatgttgatggtaaaggtgtcggtgacattggtaacgttgttattcat
gatcgtcaattattatctgaagaaggtatggtcgttgttgtcgcaactattgattacaag
aaacacattgtattagcgggtccagatattttatctcgtggatttgtttatatgcgtgaa
tctggtgaattaataaaccaagcacaaaaacgtgtcttccacctcattaagaatgcattt
gatgatgaagaaaacaaagtaactgaagctcaattaaaacgtgtaattatcgatggatta
caagatttcttatacaaacgtacagctagaaatccagttattcttccaatgttaatttca
acttcaatttaa

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Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (6)   
   Pfam (6)   
All databases (14)   

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