KEGG   Lactobacillus helveticus DPC 4571: lhv_0302
Entry
lhv_0302          CDS       T00625                                 
Name
(GenBank) DNA-directed RNA polymerase, beta subunit
  KO
K03043  DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
Organism
lhe  Lactobacillus helveticus DPC 4571
Pathway
lhe03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:lhe00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    lhv_0302
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:lhe03021]
    lhv_0302
   03400 DNA repair and recombination proteins [BR:lhe03400]
    lhv_0302
Enzymes [BR:lhe01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     lhv_0302
Transcription machinery [BR:lhe03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     lhv_0302
DNA repair and recombination proteins [BR:lhe03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      lhv_0302
SSDB
Motif
Pfam: RNA_pol_Rpb2_6 RNA_pol_Rpb2_2 RNA_pol_Rpb2_7 RNA_pol_Rpb2_3 RNA_pol_Rpb2_45 RNA_pol_Rpb2_1
Other DBs
NCBI-ProteinID: ABX26529
UniProt: A8YXJ8
Position
311139..314780
AA seq 1213 aa
MLNGHVVNYGKHRTRRSFSRIKEVLKLPNLTDVQTESYKWFLDKGIKEVFDDIMPISDFS
GKLSLEYEGYKLQKPKYTVDEARDHDATYAAPMRVTLKLTNQETGEIKTQDVFFGDLPLM
TESGSFIVNGAERVIVSQLVRSPGVYYTGDYDKNGRQIFGTTVIPNRGAWLEYETDAKNV
SFVRVDRTRKLPLTVLIRAMGIGSDSDIIDMFGQSDTLQFTLDKDVHKNPADSRVAEAIK
DIYERLRPGEPKTTDSSRSLLYARFFDPRRYDLAPVGRYKINKKLSLKNRLYGQTLAETL
ADPDTGEIIAKKDTVVTHEVMDKLAPYLDRDDFKMVTYQPSKEGVLPDPITVQEIKVYSK
VDPEREVKLMSNGHIAEDVKHLTPADVLASINYFFALQDKIGTTDDIDHLGNRRIRRVGE
LLQNQFRIGLARMERVVRERMSIQDPLTVTPQQLINIRPIVASIKEFFGSSQLSQFMDQH
NPLGELTHKRRMSALGPGGLTRDRAGYEVRDVHYTHYGRLCPIETPEGPNIGLINSLASY
AIINKYGFIETPYRRVSWKTHKVTDKIDYLTADEEDNYIIAGANTPLNDDGSFKSDVILA
RQKEDNVEVTPDKIDYMDVIPKQVVSVASACIPFLENDDSNRALMGANQQRQAEPLINPH
GSLVGTGMEYRAAHDSGAALIAKAAGTVEYVDANEIRIRREDGTLDKYTLEKYRRSNNSK
SYNQTPNVKLGDHVDVSDVIANGPTMDHGELALGQNPLIAFMTWNMYNYEDAIMLSERLV
KDDVYTSISIEDYESEARDTKLGPEEITRELPNIGEDALKDLDADGIVRVGAEVHDGDIL
VGKVTPKGVTELSAEERLLHAIFGEKAHEVRDTSLRVPHGGGGIVQDVKVYTREAGDELS
PGVNTMVRVYIAQKRKIQVGDKMSGRHGNKGTVAAVVPEEDMPYLPDGTPVDICLNPMGV
PSRMNIGQLLELHLGAAARQLGIHVATPVFAGANENDVWDTVRQAGIDKDGKTVIYDGRT
GEPFHNRVSVGVMHYLKLTHMVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWA
LEAYGAAYTLQEILTYKSDDVVGRVKAYEAIVKGERIPKPGVPESFRVLVKELQSLGLDI
RVLDMNHNEIELRDMDEDSSEHLNIDSLSRMAEEQEKKKLAEETGKSGDKKENKKDADKP
VAPADESDDKVSK
NT seq 3642 nt   +upstreamnt  +downstreamnt
ttgttaaatggacacgtagtgaactacggtaaacatcgaactagacgtagcttctctcgc
attaaagaagtattgaagcttcccaacttaactgatgttcaaaccgaatcatataagtgg
tttcttgataaaggcattaaagaagtttttgatgacattatgcctattagtgacttctca
ggtaagctttcattagaatatgaaggctacaagcttcaaaagcctaaatatacagttgat
gaagctcgtgatcacgatgcgacttatgctgcaccaatgcgcgtaaccttaaagcttact
aaccaagaaactggtgaaattaagactcaagatgtattctttggcgatttaccattgatg
accgaatcaggttcattcattgttaatggtgctgaaagagttattgtttctcaattagta
agatctccaggtgtgtactacactggtgattacgacaagaatggtcgtcaaatctttggt
actacagttattcctaaccgtggtgcttggcttgaatatgaaactgatgctaagaatgtt
tcatttgttcgtgtagaccgtactcgtaagttgccacttactgtattgattagagctatg
ggtatcggctctgatagtgacatcatcgacatgtttggtcaaagcgatactttacaattt
actttggacaaagatgttcacaagaatccagcagattctcgtgtagctgaagccataaag
gatatttacgaaagattacgtccaggtgaacctaagacaactgattcatcacgttcactt
ttgtatgctcgtttctttgacccacgtcgttacgacttggcaccagttggtcgttacaag
attaacaagaagctttcacttaagaaccgtttatacggtcaaactttagctgaaactttg
gctgatccagatactggtgaaatcattgctaagaaggatactgttgttactcacgaagta
atggacaagttagctccataccttgatcgtgatgactttaagatggtaacttaccaacct
tcaaaggaaggcgtattaccagatcctattacagttcaagaaattaaggtttactcaaag
gtagatcctgaacgtgaagttaaattaatgtcaaatggtcatattgctgaagatgttaag
cacttaactccagcagatgttttggcatcaattaactacttctttgctttacaagacaag
attggtaccactgatgatatcgaccacttgggtaaccgtcgtattcgtcgtgttggtgaa
cttcttcaaaaccaatttagaattggtttagcaagaatggaacgtgttgttcgtgaaaga
atgtcaatccaagatcctttaaccgttactccacaacaattgatcaatattcgtccaatt
gttgcaagtatcaaggaattcttcggttcatcacaactttcacaatttatggaccaacac
aacccattaggtgaattgactcacaagcgtcgtatgtcagccttagggcctggtggtttg
actcgtgaccgtgctggttatgaagttcgtgacgttcactatactcactatggtcgtttg
tgtcctatcgaaactccagaaggtcctaacattggtttgatcaactcacttgcttcatac
gcaattattaacaagtatggtttcattgaaactccataccgtcgtgtatcttggaagact
cacaaggttactgataagatcgactacttaactgctgatgaagaagataattacatcatt
gccggtgcaaacactcctttgaatgacgatggttcatttaagagtgatgtgatcttagct
cgtcaaaaggaagataacgtcgaagttactcctgataagattgactacatggacgttatt
cctaagcaagttgtttctgtagcttcagcatgtattccattccttgaaaacgatgactct
aaccgtgctttgatgggtgccaaccagcaacgtcaggcagaacctttgatcaacccacat
ggttcacttgttggtactggtatggaatatcgtgccgctcacgattcaggtgctgcttta
attgctaaggctgctggtactgttgaatacgtagatgcaaatgaaatccgtatcagacgt
gaagatggtactttagacaagtacactcttgaaaaataccgtcgttcaaacaactctaag
tcatacaaccaaactcctaatgttaaattaggtgatcatgttgacgtaagtgatgttatt
gctaacggtccaactatggatcacggtgaacttgctttaggtcaaaacccacttatcgct
ttcatgacctggaacatgtacaactacgaagatgccatcatgctttcagaacgtttagtt
aaggatgatgtttacacttcaattagtattgaagactacgaatcagaagctcgtgacact
aagcttggccctgaagaaattactagagaacttcctaacatcggtgaagatgctttgaag
gatcttgatgctgacggtattgtacgtgtcggtgctgaagttcacgatggtgatattttg
gtaggtaaggtaactcctaagggtgtaactgaattatctgctgaagaaagattacttcac
gcaatctttggtgaaaaggctcatgaagttcgtgatacttcacttcgtgtaccacacggt
ggtggcggtatcgttcaagacgttaaggtttatactcgtgaagctggcgatgaactttca
ccaggtgttaacactatggttcgtgtttacattgcacaaaagagaaagattcaagttggg
gacaagatgtctggtcgtcacggtaacaagggtactgttgctgctgttgtaccagaagaa
gatatgccatacttaccagatggtactccagtagacatttgtttgaacccaatgggtgtt
ccatcacgtatgaacatcggacagcttcttgaattacacttgggtgcagcagcacgtcaa
ttaggtattcacgtagctactccagtatttgctggtgctaacgaaaatgacgtttgggac
actgttcgtcaagctggtattgataaagatggtaagactgttatttacgatggtcgtacc
ggtgaaccattccacaaccgtgtatctgtaggtgtcatgcactacttgaaacttactcac
atggttgatgacaagatccatgctcgttcaattgggccttactcattagttactcaacaa
cctttgggtggtaaagctcagttcggtggtcagcgtttcggtgaaatggaagtttgggcc
cttgaagcttacggtgcagcttacacattgcaagaaattttgacttacaagtcagatgat
gttgttggtcgtgtaaaggcatacgaagcaattgttaagggtgaaagaattcctaagcca
ggtgttccagaatcattccgtgttcttgttaaggaacttcaatcattaggtttggatatt
cgtgttcttgatatgaatcataatgaaattgaacttcgtgatatggatgaagattcaagt
gaacacttaaacattgattcattgtcacgtatggcagaagaacaagaaaagaagaagtta
gccgaagaaactggaaaatcaggagataagaaagaaaacaagaaagatgcagataagcca
gtagctcctgcagatgaatctgacgacaaagtttctaaatag

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   SWISS-PROT (1)   
Protein domain (6)   
   Pfam (6)   
All databases (18)   

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