KEGG   Laribacter hongkongensis: LHK_00247
Entry
LHK_00247         CDS       T00884                                 
Symbol
rpoC
Name
(GenBank) RpoC
  KO
K03046  DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
Organism
lhk  Laribacter hongkongensis
Pathway
lhk03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:lhk00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    LHK_00247 (rpoC)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:lhk03021]
    LHK_00247 (rpoC)
   03400 DNA repair and recombination proteins [BR:lhk03400]
    LHK_00247 (rpoC)
Enzymes [BR:lhk01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     LHK_00247 (rpoC)
Transcription machinery [BR:lhk03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     LHK_00247 (rpoC)
DNA repair and recombination proteins [BR:lhk03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      LHK_00247 (rpoC)
SSDB
Motif
Pfam: RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4 Biotin_lipoyl_2 Apocytochr_F_C
Other DBs
NCBI-ProteinID: ACO73242
UniProt: C1DAR1
Position
246718..250923
AA seq 1401 aa
MKALLDLFKQVTQEEEFDAIKIGIASPDTIRAWSFGEVKKPETINYRTFKPERDGLFCAR
IFGPIKDYECLCGKYKRLKHRGVICEKCGVEVTLSKVRRERMGHIDLASPVAHIWFLKSL
PSRLGMVLDMTLRDIERVLYFEAYVVTEPGMTPLNRKQLLTEEDYLNKLEEYGDEFEALM
GAEGVRALLKSLALDSEVETLRAELDATNSETKIKKIAKRLKVLEAFQRTGIKPEWMILE
VLPVLPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLELRAPEIIVRNEKRMLQ
ESVDSLLDNGRRGKAMTGANKRPLKSLADMIKGKGGRFRQNLLGKRVDYSGRSVITVGPT
LRLHQCGLPKKMALELFKPFIFHKLEVLGLATTIKAAKKLVEQEVPEVWDILEDVIREHP
VMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCTAFNADFDGDQMAVHVPLSLEAQMEA
RTLMLSSNNVLSPANGEPIIVPSQDIVLGLYYITRDKINGRGEGMTFSDVGEVSRAYETR
QVELGTRITVRLVEWEKDEQGEFQPVLRRVQTTVGRALLSEILPKGLPFEHINKALKKKE
ISKLINVSFRRCGIKDTVVFADQLMYTGFSYSTRGGISICVDDMLIPTNKGELLAEAQNE
VKEIEEQYRQGLVTQGERYNKVVDIWGKCGDKVAKAMMDQLKTQKVIDREGKEVDQESFN
SIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLTVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVTQDLVVIETDCGTSNGVVMKAVVQGGDVVEALRDRIL
GRVAAIDVVNPATGETVIESGSLFDEQLVDLVDQLGIDEVKVRTPITCETRYGLCAKCYG
RDLGRGKLVNTGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRNAAASQVESKSNGVISF
SSQMRYVKNDKGELVVIARSGEVVVHEELPDGRTGRERERHNIPYGATLLVTDSLSIKAG
TVLATWDPHTRPIITEYGGRVRFENVEEGTTVAKQVDDVTGLSTLVVIDPKRRGSASKVL
RPQVKLLDENGLEVKLAGTDTPVNITFQVGAIITVRDGQEVGVGEVLARIPQETSKTRDI
TGGLPRVAELFEARSPKDAGMLADVTGTVSFGKDTKGKQRLVITDLEGIAHETLIPKEKH
VLVHDGQVVNRGELIVDGPVDPHDILRLQGIEALSRYIVQEVQEVYRLQGVKINDKHIEV
IIRQMLRRVIINDAGNTDFIVGEQVERSEVYDVNDRMAADSKEAARFDNVLLGITKASLS
TDSFISAASFQETTRVLTEAAIMGKKDDLRGLKENVIVGRLIPAGTGLAYHKNRHRQSQI
NDLLTGDAMTASPDGQAHSAF
NT seq 4206 nt   +upstreamnt  +downstreamnt
atgaaagctctgctcgacctcttcaagcaagtcacgcaagaagaagaattcgacgcgatc
aagatcggcatcgcgtcgccggataccatccgtgcctggtcttttggcgaagtcaaaaag
cccgagaccatcaactaccgtaccttcaagccggaacgggacggcctgttctgcgcccgc
atcttcggcccgatcaaggactacgagtgcctgtgcggcaagtacaagcgtctcaagcac
cgcggcgtgatctgcgaaaagtgcggcgttgaagtcaccctgtcgaaagtgcgccgtgag
cgcatgggtcacatcgacctcgcctcgccggtggcccacatctggttcctgaagtcgctg
ccgtcgcgtctgggcatggtgctcgacatgaccctgcgcgacatcgaacgcgtgctgtac
ttcgaagcctacgtggtgaccgagccgggcatgaccccgctcaaccgcaagcagttgctg
accgaagaggactacctcaacaagctcgaagagtacggtgacgaattcgaagccctgatg
ggtgccgaaggcgtgcgcgcactcctcaagagcctggcgctcgacagcgaggtggaaacc
ctgcgcgccgaactcgacgccaccaattcggaaaccaagatcaagaagatcgccaagcgc
ctcaaggtgctcgaggccttccagcgcaccggcatcaagccggaatggatgatcctcgaa
gtgctgccggtgctgccgccggagctgcgcccgctggtgccgctggatggcggccgcttt
gcgacctctgacctgaacgacctctaccgtcgcgtcatcaaccgcaacaaccgcctcaag
cggctgctggaactgcgcgcaccggaaatcatcgtgcgcaacgaaaagcgcatgctgcag
gaatcggtggattcgctgctcgacaacggtcgtcgcggcaaggccatgaccggcgccaac
aagcgtccgctgaagtcgctggccgacatgatcaagggcaagggcggccgcttccgccag
aacctgctgggcaagcgcgtcgactactccggtcgttcggtgattaccgtgggcccgacc
ctgcgcctgcaccagtgcggcctgccgaagaaaatggcgcttgagctcttcaagccgttc
attttccacaagctggaagtgctgggtctggcgaccaccatcaaggccgccaagaaactg
gtcgagcaggaagtgccggaagtgtgggacatccttgaggatgtcatccgcgaacacccg
gtcatgctcaaccgcgcaccgaccctgcaccgtctgggcatccaggcattcgaaccggtg
ctgatcgaaggcaaggccatccagctgcacccgctggtgtgtaccgctttcaacgccgac
ttcgacggtgaccagatggccgtccacgtgccgctgtcgctcgaagcgcagatggaagcc
cgcaccctgatgctgtcttccaacaacgtgctgtcgcccgccaacggcgagccgatcatc
gtgccgtcgcaggatatcgtgctgggtctttactacatcacccgagacaagatcaacggt
cgcggcgaaggcatgaccttctccgacgtgggtgaagtcagccgtgcctacgaaacccgc
caggtcgaactcggcacccgcatcaccgtgcgtctggtcgagtgggaaaaggacgagcag
ggcgaattccagccggtgctgcgtcgtgtgcaaaccaccgtcggtcgtgcactgctgtcg
gaaatcctgcccaagggcctgccgttcgagcacatcaacaaggcgctgaagaaaaaggaa
atttccaagctcatcaacgtctcgttccgtcgctgcggcatcaaggacaccgtggtgttc
gccgaccagctgatgtacaccggtttcagctactcgacccgtggcggcatctcgatctgt
gtcgatgacatgctgatcccgaccaacaagggcgaactgctggccgaggcccagaatgag
gtcaaggaaatcgaagagcagtaccgccagggtctggtgacccagggcgagcgctacaac
aaggtggtggacatctggggcaagtgcggcgataaggtcgccaaggccatgatggaccag
ctcaagacccagaaggtcatcgaccgcgaaggcaaggaagtcgaccaggaatccttcaac
tcgatctacatgatggccgactccggtgctcggggtagcgctgcacagatccgccagctg
gccggcatgcggggcctgatggccaagccggacggctcgatcatcgaaacgccgattacc
gcgaacttccgcgaaggcctgacggtgttgcagtacttcatctcgacccacggtgcccgc
aagggtctggccgataccgcgctgaagaccgccaactccggttacctgacccgtcgtctg
gtcgacgtgacccaggatctggtagtgatcgaaaccgattgcggcaccagcaacggcgtc
gtgatgaaggctgtggtacagggcggcgacgtggtcgaagccctgcgtgaccgcatcctc
ggtcgcgtggccgcgattgacgtcgtcaacccggcgaccggcgaaaccgtgatcgaatcg
ggcagcctgtttgacgaacagctcgtcgacctggttgaccagctcggcatcgacgaagtc
aaggtacgtacgccgatcacctgcgaaacccgctacggcctgtgcgccaagtgctacggt
cgtgacttgggtcgcggcaagctcgtcaacacgggcgaagccgtcggcgtcatcgccgcc
cagtcgatcggtgaaccgggtacgcagctcaccatgcggaccttccacatcggtggtgct
gcctcgcgtaatgcggcggccagccaggtggaatcgaagtccaacggtgtgatcagcttc
tcgagccagatgcgctacgtcaagaacgacaagggcgaactggtcgtgatcgcacgttct
ggcgaggtggtggtgcacgaagagctgcctgacggccgtaccggtcgcgagcgcgagcgc
cacaacattccgtacggcgccacgctgctggtgaccgacagcctgtcgatcaaggccggc
actgtgctggcgacctgggacccgcacacccgtccgatcattaccgaatacggtggccgc
gtccgcttcgaaaacgtcgaggaaggcacgaccgtcgccaagcaggtggacgatgtgacc
ggtctgtcgaccctcgtggtgatcgacccgaaacgtcgtggctcggcttccaaggtgctg
cgtccgcaggtcaagctgttggacgaaaatggcctcgaagtgaagctggccggcaccgat
acgccggtgaacatcaccttccaggtcggcgccatcatcacggtgcgcgacggtcaggaa
gtgggcgtcggcgaagtgctggcccgcattccgcaggaaacctcgaagacccgcgacatt
accggtggtctgccgcgcgtggccgagctcttcgaagcccgctcgccgaaggatgccggc
atgctggccgacgtgaccggtaccgtgtcgttcggcaaggacaccaagggcaagcagcgc
ctggtgatcaccgacctggaaggcattgcgcacgaaacgctgatcccgaaggaaaagcac
gtgctggtgcacgacggccaggtggtgaaccgcggcgaactgatcgtcgacggtccggtc
gatccgcacgacatcctgcgtctgcagggtatcgaggcgttgtcgcgctacatcgtgcag
gaggtgcaggaggtctaccgcctgcaaggcgtgaagatcaacgacaagcacattgaggtg
atcatccgccagatgctgcgtcgcgtgatcatcaacgatgccggcaacaccgacttcatc
gtgggtgaacaggtcgagcgttccgaggtgtacgacgtcaacgaccgcatggctgcggac
agcaaggaagctgcccgcttcgataacgtgctcctcggcatcaccaaggcctcgctgtcg
accgactcgttcatctcggcggcgtcgttccaggagaccacccgcgtgctgaccgaagcc
gccatcatgggcaagaaggacgacctgcgcggcctgaaggaaaacgtgatcgtgggccgc
ctgatcccggccggaaccggtctggcctatcacaaaaaccggcatcgccagagccagatc
aatgatctgctgaccggtgatgccatgaccgccagcccggacggtcaggcgcactcggcg
ttctaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (15)   
   KEGG ORTHOLOGY (1)   
   RefGene (12)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (7)   
   Pfam (7)   
All databases (30)   

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