KEGG   Lotus japonicus: Lj3g3v2926310.3
Entry
Lj3g3v2926310.3   CDS       T04348                                 
Symbol
Lj3g3v2926310.3
Name
(Kazusa) -
  KO
K10754  replication factor C subunit 1
Organism
lja  Lotus japonicus
Pathway
lja03030  DNA replication
lja03410  Base excision repair
lja03420  Nucleotide excision repair
lja03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:lja00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    Lj3g3v2926310.3 (Lj3g3v2926310.3)
   03410 Base excision repair
    Lj3g3v2926310.3 (Lj3g3v2926310.3)
   03420 Nucleotide excision repair
    Lj3g3v2926310.3 (Lj3g3v2926310.3)
   03430 Mismatch repair
    Lj3g3v2926310.3 (Lj3g3v2926310.3)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:lja03032]
    Lj3g3v2926310.3 (Lj3g3v2926310.3)
   03400 DNA repair and recombination proteins [BR:lja03400]
    Lj3g3v2926310.3 (Lj3g3v2926310.3)
DNA replication proteins [BR:lja03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    Lj3g3v2926310.3 (Lj3g3v2926310.3)
DNA repair and recombination proteins [BR:lja03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     Lj3g3v2926310.3 (Lj3g3v2926310.3)
SSDB
Motif
Pfam: BRCT AAA AAA_19 PTCB-BRCT AAA_22 DNA_pol3_delta Rad17 AAA_30 RuvB_N Sigma54_activ_2 AAA_33 nSTAND3 AAA_assoc_2 Zeta_toxin AAA_14 AAA_16 BRCT_2 Gp44_lid RNA_helicase AAA_18 TsaE AAA_17 NTPase_1 AAA_5 AAA_24 Bro-N RsgA_GTPase
AA seq 420 aa
MNFGERKDPPHKGEKEVPEGAPDCLAGLTFVISGTLDSLEREEAEDLVKRHGGRVTGSVS
KKTNSLLCDEDIGGRKSEKAKELGTKFLTEDGLFDMIRASKPSKATSQEECKKPLNKAVA
VAPQTKSAPKAEAKVSLSSRSPSNQFKLKTATATQYSLTWTEKYRPRDPKDIIGNQSLVS
QLRNWLKAWHEQFSVSGNKKHGKKQSDSGAKKAVLLSGTPGIGKTTSAKLVCQELGFQAI
EVNASDSRGKADGKIEKGISGSNANTMKELVTNEALGINMDRSKLSKTVLIMDEVDGMSA
GDRGGVADLIASIKMSKVPIICICNDRYSQKLKSLVNYCLLLSFRKPTKQQMAKRLMDVA
KAEGLQVNEIALEELAERVNGDMRMALNQLHYMSLSMSVINYDDIRKRLLNNAKDEDISP
NT seq 1260 nt   +upstreamnt  +downstreamnt
atgaattttggagaaagaaaagatcctccacacaagggagaaaaggaagtccctgaaggt
gctcctgactgtttagctggtttaactttcgtaatcagcggaacactggacagtttggaa
cgagaagaagcagaagatttggttaaacgccatggtggccgtgtcactggatcagtcagc
aagaaaacgaattctttgttatgtgatgaagatattgggggacggaagtccgaaaaagct
aaagagctaggaacaaaattcctcacagaggatgggttgtttgatatgattcgtgcatca
aaaccttcaaaagctacctcacaagaagaatgcaagaaacctctgaataaggctgttgca
gtagcaccccagacaaaaagtgccccaaaagctgaagcaaaggtctctttgtcttcacgc
tcaccttccaaccaattcaagctgaagacagcaactgctactcagtattctttgacgtgg
acagagaaatatcggcctagagatccaaaggatatcatagggaatcagtcacttgtgtct
caacttcgaaattggttaaaagcttggcatgagcaattttcggtttctggtaacaaaaaa
catggaaaaaagcaaagtgattcgggtgccaaaaaagctgttttgttaagtggaacccct
ggtataggaaaaacaacttcagcaaagttggtctgtcaggagcttggtttccaggccata
gaggtgaatgctagtgatagccgtggaaaagctgatggcaaaattgaaaaaggaattagt
ggaagcaatgcaaatactatgaaggaacttgtaaccaatgaggctctcggcattaatatg
gatcggtcaaagctttccaaaactgtgcttattatggatgaggttgatgggatgtcagct
ggtgataggggtggtgttgctgatctcattgccagcatcaagatgtcaaaagttcctatt
atttgcatttgcaatgaccgttacagccagaaactgaaaagccttgtgaactactgtttg
cttcttagttttcggaagcctacaaagcaacagatggcaaagagattgatggatgttgca
aaggctgaagggcttcaagttaatgagattgctcttgaggaactagcagaaagagttaat
ggagatatgcgcatggcactaaaccagctacactatatgagcctctccatgtcagttatc
aactacgatgatattaggaagcgcttacttaacaatgcgaaggatgaagacatttcacca

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (4)   
   KEGG PATHWAY (4)   
Genome (1)   
   KEGG GENOME (1)   
Gene (2)   
   KEGG ORTHOLOGY (1)   
   OC (1)   
Protein domain (27)   
   Pfam (27)   
All databases (37)   

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